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(石蒜科)的完整叶绿体基因组及遗传比较。

Complete chloroplast genome of (Amaryllidaceae) and genetic comparison.

作者信息

Zhang Fengjiao, Zhuang Weibing, Shu Xiaochun, Wang Tao, Wang Zhong

机构信息

Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, PR China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 15;4(2):3577-3578. doi: 10.1080/23802359.2019.1676673.

DOI:10.1080/23802359.2019.1676673
PMID:33366093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707319/
Abstract

is native to China and has various variations. It belongs to the Amaryllidaceae family, which contains abundant alkaloids for medical use and also was planted as garden bulbous flowers. In this study, we assembled the complete chloroplast (cp) genome of by DNA sequencing, which will improve the complete cp genomic information for analysis of phylogenetic relationships and germplasm identification in . The whole cp genome is 158,687 bp, which contained a large single-copy region (LSC) of 86,489 bp, a small single-copy region (SSC) of 18,540 bp, and a pair of inverted repeats (IRs) of 26,829 bp. A total of 137 genes were annotated, including 87 protein coding genes (PCGs), 42 tRNA, and 8 rRNA genes. Phylogenetic tree analysis revealed that the close relationship of three species of (, , and ) in the Amaryllidaceae family.

摘要

原产于中国,有多种变种。它属于石蒜科,该科含有丰富的药用生物碱,也曾作为园林球根花卉种植。在本研究中,我们通过DNA测序组装了[物种名称]的完整叶绿体(cp)基因组,这将完善完整的cp基因组信息,用于分析[物种名称]的系统发育关系和种质鉴定。整个cp基因组为158,687 bp,包含一个86,489 bp的大单拷贝区域(LSC)、一个18,540 bp 的小单拷贝区域(SSC)和一对26,829 bp的反向重复序列(IRs)。总共注释了137个基因,包括87个蛋白质编码基因(PCG)、42个tRNA和8个rRNA基因。系统发育树分析表明石蒜科中[物种名称]的三个物种([物种名称1]、[物种名称2]和[物种名称])关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/691b/7707319/d0453ecfcca6/TMDN_A_1676673_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/691b/7707319/d0453ecfcca6/TMDN_A_1676673_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/691b/7707319/d0453ecfcca6/TMDN_A_1676673_F0001_B.jpg

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Biology (Basel). 2021 Jul 27;10(8):715. doi: 10.3390/biology10080715.
4
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5
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Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
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