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（小杆目：杯冠亚科）的完整线粒体基因组及系统发育分析

Complete mitochondrial genome and phylogenetic analysis of (Rhabditida: Cyathostominae).

作者信息

Wang Shuanghui, Li Peng, Sun Chenguang, Liu Wei, Bu Yanzhen

机构信息

Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Nanning Normal University, Nanning, China.

College of Life Sciences, Henan Normal University, Xinxiang, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 20;5(1):744-745. doi: 10.1080/23802359.2020.1715289.

DOI:10.1080/23802359.2020.1715289
PMID:33366730
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748751/
Abstract

The complete mitochondrial genome sequence of was sequenced in the present study. It was determined to be 13,839 bp bases. The overall base composition was 30.93% A, 45.75% T, 6.97% C, and 16.35% G, with a very strong A + T bias (76.65%). The nucleotide sequence data of 12 protein-coding genes of and other 16 Strongylidae species were used for phylogenetic analyses. was closely related with species rather than other species. The complete mitogenome will facilitate taxonomy and systematics studies of Cyathostominae nematodes.

摘要

在本研究中对[物种名称]的完整线粒体基因组序列进行了测序。其长度确定为13,839个碱基对。总体碱基组成为30.93%A、45.75%T、6.97%C和16.35%G，具有很强的A+T偏向性（76.65%）。利用[物种名称]的12个蛋白质编码基因以及其他16种圆线科物种的核苷酸序列数据进行系统发育分析。[物种名称]与[相关物种名称]物种关系密切，而非其他[物种名称]物种。完整的线粒体基因组将有助于杯冠属线虫的分类学和系统学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b149/7748751/9b7d2104bf1c/TMDN_A_1715289_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b149/7748751/9b7d2104bf1c/TMDN_A_1715289_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b149/7748751/9b7d2104bf1c/TMDN_A_1715289_F0001_B.jpg

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本文引用的文献

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Front Microbiol. 2017 Aug 3;8:1444. doi: 10.3389/fmicb.2017.01444. eCollection 2017.
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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
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