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采用固态 NMR 技术研究与底物和抑制剂结合的大型酶。

Solid-state NMR approaches to investigate large enzymes in complex with substrates and inhibitors.

机构信息

Bavarian NMR Center, Department of Chemistry, Technical University of Munich, 85748 Garching, Germany.

Institute of Structural Biology, Helmholtz Zentrum München, 85764 Neuherberg, Germany.

出版信息

Biochem Soc Trans. 2021 Feb 26;49(1):131-144. doi: 10.1042/BST20200099.

Abstract

Enzyme catalysis is omnipresent in the cell. The mechanisms by which highly evolved protein folds enable rapid and specific chemical transformation of substrates belong to the marvels of structural biology. Targeting of enzymes with inhibitors has immediate application in drug discovery, from chemotherapeutics over antibiotics to antivirals. NMR spectroscopy combines multiple assets for the investigation of enzyme function. The non-invasive technique can probe enzyme structure and dynamics and map interactions with substrates, cofactors and inhibitors at the atomic level. With experiments performed at close to native conditions, catalytic transformations can be monitored in real time, giving access to kinetic parameters. The power of NMR in the solid state, in contrast with solution, lies in the absence of fundamental size limitations, which is crucial for enzymes that are either membrane-embedded or assemble into large soluble complexes exceeding hundreds of kilodaltons in molecular weight. Here we review recent progress in solid-state NMR methodology, which has taken big leaps in the past years due to steady improvements in hardware design, notably magic angle spinning, and connect it to parallel biochemical advances that enable isotope labelling of increasingly complex enzymes. We first discuss general concepts and requirements of the method and then highlight the state-of-the-art in sample preparation, structure determination, dynamics and interaction studies. We focus on examples where solid-state NMR has been instrumental in elucidating enzyme mechanism, alone or in integrative studies.

摘要

酶催化在细胞中无处不在。高度进化的蛋白质折叠机制能够实现快速和特异性的底物化学转化,这属于结构生物学的奇迹。通过抑制剂靶向酶具有直接的应用价值,从化疗药物、抗生素到抗病毒药物。NMR 光谱结合了多种资产,用于研究酶的功能。该非侵入性技术可以探测酶的结构和动态,并在原子水平上绘制与底物、辅因子和抑制剂的相互作用图。通过在接近天然条件下进行实验,可以实时监测催化转化,获得动力学参数。与溶液相比,NMR 在固态中的优势在于不存在基本的尺寸限制,这对于那些要么嵌入膜中,要么组装成分子量超过数百千道尔顿的大型可溶性复合物的酶至关重要。本文综述了近年来固态 NMR 方法学的进展,由于硬件设计的稳步改进,特别是魔角旋转,该方法取得了重大飞跃,并将其与平行的生化进展联系起来,这些进展使得对越来越复杂的酶进行同位素标记成为可能。我们首先讨论了该方法的一般概念和要求,然后重点介绍了在样品制备、结构测定、动力学和相互作用研究方面的最新进展。我们关注的是固态 NMR 在阐明酶机制方面发挥重要作用的例子,无论是单独使用还是综合研究。

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