• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Active-Site Controlled, Jahn-Teller Enabled Regioselectivity in Reductive S-C Bond Cleavage of -Adenosylmethionine in Radical SAM Enzymes.自由基 S-腺苷甲硫氨酸酶中 -Adenosylmethionine 的还原 S-C 键断裂的活性部位控制、Jahn-Teller 促进的区域选择性。
J Am Chem Soc. 2021 Jan 13;143(1):335-348. doi: 10.1021/jacs.0c10925. Epub 2020 Dec 29.
2
Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an -Adenosylmethionine Derived Methyl Radical.光诱导电子转移在自由基 S-腺苷甲硫氨酸酶中生成 -S-腺苷甲硫氨酸衍生的甲基自由基。
J Am Chem Soc. 2019 Oct 9;141(40):16117-16124. doi: 10.1021/jacs.9b08541. Epub 2019 Sep 26.
3
ENDOR Spectroscopy Reveals the "Free" 5'-Deoxyadenosyl Radical in a Radical SAM Enzyme Active Site Actually is Chaperoned by Close Interaction with the Methionine-Bound [4Fe-4S] Cluster.电子顺磁共振波谱学揭示了活性位点中“游离”的 5'-脱氧腺嘌呤核苷自由基实际上是由与蛋氨酸结合的 [4Fe-4S] 簇的紧密相互作用所“护送”的。
J Am Chem Soc. 2024 Feb 14;146(6):3710-3720. doi: 10.1021/jacs.3c09428. Epub 2024 Feb 3.
4
Mechanism of Radical Initiation in the Radical SAM Enzyme Superfamily.自由基 SAM 酶超家族中自由基引发的机制。
Annu Rev Biochem. 2023 Jun 20;92:333-349. doi: 10.1146/annurev-biochem-052621-090638. Epub 2023 Apr 4.
5
Radical SAM Enzyme Spore Photoproduct Lyase: Properties of the Ω Organometallic Intermediate and Identification of Stable Protein Radicals Formed during Substrate-Free Turnover.激进的 SAM 酶孢子嘧啶光裂酶:Ω 有机金属中间体的性质和在无底物转化过程中形成的稳定蛋白自由基的鉴定。
J Am Chem Soc. 2020 Oct 28;142(43):18652-18660. doi: 10.1021/jacs.0c08585. Epub 2020 Oct 15.
6
Radical SAM enzymes: Nature's choice for radical reactions.自由基 S-腺苷甲硫氨酸酶:自由基反应的自然选择。
FEBS Lett. 2023 Jan;597(1):92-101. doi: 10.1002/1873-3468.14519. Epub 2022 Oct 27.
7
Mechanism of Radical Initiation in the Radical S-Adenosyl-l-methionine Superfamily.自由基 S-腺苷甲硫氨酸超家族中自由基引发的机制。
Acc Chem Res. 2018 Nov 20;51(11):2611-2619. doi: 10.1021/acs.accounts.8b00356. Epub 2018 Oct 15.
8
Substrate-Dependent Cleavage Site Selection by Unconventional Radical S-Adenosylmethionine Enzymes in Diphthamide Biosynthesis.非常规的 S-腺苷甲硫氨酸酶在二氢喋呤生物合成中依赖于底物的切割位点选择。
J Am Chem Soc. 2017 Apr 26;139(16):5680-5683. doi: 10.1021/jacs.7b01712. Epub 2017 Apr 13.
9
Generation of adenosyl radical from S-adenosylmethionine (SAM) in biotin synthase.生物素合酶中从 S-腺苷甲硫氨酸 (SAM) 生成腺嘌呤核苷自由基。
J Inorg Biochem. 2011 Jun;105(6):850-7. doi: 10.1016/j.jinorgbio.2011.03.013. Epub 2011 Mar 24.
10
Paradigm Shift for Radical S-Adenosyl-l-methionine Reactions: The Organometallic Intermediate Ω Is Central to Catalysis. radically S-adenosyl-l-methionine 反应的范式转变:有机金属中间体 Ω 是催化的核心。
J Am Chem Soc. 2018 Jul 18;140(28):8634-8638. doi: 10.1021/jacs.8b04061. Epub 2018 Jul 6.

引用本文的文献

1
Initiation, Propagation, and Termination in the Chemistry of Radical SAM Enzymes.自由基S-腺苷甲硫氨酸酶化学中的引发、传播和终止
Biochemistry. 2024 Dec 17;63(24):3161-3183. doi: 10.1021/acs.biochem.4c00518. Epub 2024 Dec 3.
2
ENDOR Spectroscopy Reveals the "Free" 5'-Deoxyadenosyl Radical in a Radical SAM Enzyme Active Site Actually is Chaperoned by Close Interaction with the Methionine-Bound [4Fe-4S] Cluster.电子顺磁共振波谱学揭示了活性位点中“游离”的 5'-脱氧腺嘌呤核苷自由基实际上是由与蛋氨酸结合的 [4Fe-4S] 簇的紧密相互作用所“护送”的。
J Am Chem Soc. 2024 Feb 14;146(6):3710-3720. doi: 10.1021/jacs.3c09428. Epub 2024 Feb 3.
3
Pyruvate formate-lyase activating enzyme: The catalytically active 5'-deoxyadenosyl radical caught in the act of H-atom abstraction.丙酮酸甲酸裂解酶激活酶:催化活性的 5'-脱氧腺苷自由基在 H 原子提取反应中被捕获。
Proc Natl Acad Sci U S A. 2023 Nov 21;120(47):e2314696120. doi: 10.1073/pnas.2314696120. Epub 2023 Nov 13.
4
Computational Description of Alkylated Iron-Sulfur Organometallic Clusters.烷基化铁-硫有机金属簇的计算描述。
J Am Chem Soc. 2023 Jun 28;145(25):13879-13887. doi: 10.1021/jacs.3c03062. Epub 2023 Jun 12.
5
Mechanism of Radical Initiation in the Radical SAM Enzyme Superfamily.自由基 SAM 酶超家族中自由基引发的机制。
Annu Rev Biochem. 2023 Jun 20;92:333-349. doi: 10.1146/annurev-biochem-052621-090638. Epub 2023 Apr 4.
6
Radical SAM enzymes: Nature's choice for radical reactions.自由基 S-腺苷甲硫氨酸酶:自由基反应的自然选择。
FEBS Lett. 2023 Jan;597(1):92-101. doi: 10.1002/1873-3468.14519. Epub 2022 Oct 27.
7
l-methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5'-Deoxyadenosyl Radical.l-甲硫氨酸腺苷化:自由基中间体和 5'-脱氧腺苷自由基的催化能力。
J Am Chem Soc. 2022 Mar 23;144(11):5087-5098. doi: 10.1021/jacs.1c13706. Epub 2022 Mar 8.
8
The B-independent glycerol dehydratase activating enzyme from Clostridium butyricum cleaves SAM to produce 5'-deoxyadenosine and not 5'-deoxy-5'-(methylthio)adenosine.丁酸梭菌中不依赖于 B 的甘油脱水酶激活酶裂解 SAM 产生 5'-脱氧腺苷而不是 5'-脱氧-5'-(甲硫基)腺苷。
J Inorg Biochem. 2022 Feb;227:111662. doi: 10.1016/j.jinorgbio.2021.111662. Epub 2021 Nov 12.
9
HydG, the "dangler" iron, and catalytic production of free CO and CN: implications for [FeFe]-hydrogenase maturation.HydG,“悬垂”铁和游离 CO 和 CN 的催化生成:对 [FeFe]-氢化酶成熟的影响。
Dalton Trans. 2021 Aug 4;50(30):10405-10422. doi: 10.1039/d1dt01359a.
10
Computational Approaches: An Underutilized Tool in the Quest to Elucidate Radical SAM Dynamics.计算方法:阐明激进 SAM 动力学的未充分利用工具。
Molecules. 2021 Apr 29;26(9):2590. doi: 10.3390/molecules26092590.

本文引用的文献

1
-Adenosyl-l-ethionine is a Catalytically Competent Analog of -Adenosyl-l-methione (SAM) in the Radical SAM Enzyme HydG.腺苷基-l-乙硫氨酸是一种在自由基 SAM 酶 HydG 中具有催化能力的腺苷基-l-甲硫氨酸(SAM)类似物。
Angew Chem Int Ed Engl. 2021 Feb 23;60(9):4666-4672. doi: 10.1002/anie.202014337. Epub 2020 Dec 1.
2
An [FeS]-Alkyl Cluster Stabilized by an Expanded Scorpionate Ligand.一种由扩展型方酸配体稳定的 [FeS]-烷基簇。
J Am Chem Soc. 2020 Aug 19;142(33):14314-14323. doi: 10.1021/jacs.0c06334. Epub 2020 Aug 6.
3
Second order Jahn-Teller interactions at unusually high molecular orbital energy separations.在异常高的分子轨道能量间隔下的二阶 Jahn-Teller 相互作用。
Dalton Trans. 2020 Apr 28;49(16):5175-5182. doi: 10.1039/d0dt00137f.
4
Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an -Adenosylmethionine Derived Methyl Radical.光诱导电子转移在自由基 S-腺苷甲硫氨酸酶中生成 -S-腺苷甲硫氨酸衍生的甲基自由基。
J Am Chem Soc. 2019 Oct 9;141(40):16117-16124. doi: 10.1021/jacs.9b08541. Epub 2019 Sep 26.
5
Analysis of Electrochemical Properties of -Adenosyl-l-methionine and Implications for Its Role in Radical SAM Enzymes.- 腺苷基-l-蛋氨酸的电化学性质分析及其在自由基 SAM 酶中的作用。
J Am Chem Soc. 2019 Jul 17;141(28):11019-11026. doi: 10.1021/jacs.9b00933. Epub 2019 Jul 8.
6
The Elusive 5'-Deoxyadenosyl Radical: Captured and Characterized by Electron Paramagnetic Resonance and Electron Nuclear Double Resonance Spectroscopies. elusive 5'-脱氧腺苷自由基:通过电子顺磁共振和电子-核双共振光谱学捕获和表征。
J Am Chem Soc. 2019 Jul 31;141(30):12139-12146. doi: 10.1021/jacs.9b05926. Epub 2019 Jul 22.
7
Mechanism of Radical Initiation in the Radical S-Adenosyl-l-methionine Superfamily.自由基 S-腺苷甲硫氨酸超家族中自由基引发的机制。
Acc Chem Res. 2018 Nov 20;51(11):2611-2619. doi: 10.1021/acs.accounts.8b00356. Epub 2018 Oct 15.
8
Mechanistic Studies of Radical SAM Enzymes: Pyruvate Formate-Lyase Activating Enzyme and Lysine 2,3-Aminomutase Case Studies.自由基S-腺苷甲硫氨酸酶的机制研究:丙酮酸甲酸裂解酶激活酶和赖氨酸2,3-氨基变位酶案例研究
Methods Enzymol. 2018;606:269-318. doi: 10.1016/bs.mie.2018.04.013. Epub 2018 Jul 7.
9
Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.自由基SAM超家族图谱:利用“即插即用”结构域实现功能的趋异进化
Methods Enzymol. 2018;606:1-71. doi: 10.1016/bs.mie.2018.06.004. Epub 2018 Jul 24.
10
Paradigm Shift for Radical S-Adenosyl-l-methionine Reactions: The Organometallic Intermediate Ω Is Central to Catalysis. radically S-adenosyl-l-methionine 反应的范式转变:有机金属中间体 Ω 是催化的核心。
J Am Chem Soc. 2018 Jul 18;140(28):8634-8638. doi: 10.1021/jacs.8b04061. Epub 2018 Jul 6.

自由基 S-腺苷甲硫氨酸酶中 -Adenosylmethionine 的还原 S-C 键断裂的活性部位控制、Jahn-Teller 促进的区域选择性。

Active-Site Controlled, Jahn-Teller Enabled Regioselectivity in Reductive S-C Bond Cleavage of -Adenosylmethionine in Radical SAM Enzymes.

机构信息

Department of Chemistry & Biochemistry, Montana State University, Bozeman, Montana 59717, United States.

Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.

出版信息

J Am Chem Soc. 2021 Jan 13;143(1):335-348. doi: 10.1021/jacs.0c10925. Epub 2020 Dec 29.

DOI:10.1021/jacs.0c10925
PMID:33372786
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7934139/
Abstract

Catalysis by canonical radical -adenosyl-l-methionine (SAM) enzymes involves electron transfer (ET) from [4Fe-4S] to SAM, generating an RS radical that undergoes regioselective homolytic reductive cleavage of the S-C5' bond to generate the 5'-dAdo· radical. However, cryogenic photoinduced S-C bond cleavage has regioselectively yielded either 5'-dAdo· or ·CH, and indeed, each of the three SAM S-C bonds can be regioselectively cleaved in an RS enzyme. This diversity highlights a longstanding central question: what controls regioselective homolytic S-C bond cleavage upon SAM reduction? We here provide an unexpected answer, founded on our observation that photoinduced S-C bond cleavage in multiple canonical RS enzymes reveals two enzyme classes: in one, photolysis forms 5'-dAdo·, and in another it forms ·CH. The identity of the cleaved S-C bond correlates with SAM ribose conformation but not with positioning and orientation of the sulfonium center relative to the [4Fe-4S] cluster. We have recognized the reduced-SAM RS radical is a () state with its antibonding unpaired electron in an orbital doublet, which renders RS Jahn-Teller (JT)-active and therefore subject to vibronically induced distortion. Active-site forces induce a JT distortion that localizes the odd electron in a single priority S-C antibond, which undergoes regioselective cleavage. In photolytic cleavage those forces act through control of the ribose conformation and are transmitted to the sulfur via the S-C5' bond, but during catalysis thermally induced conformational changes that enable ET from a cluster iron generate dominant additional forces that specifically select S-C5' for cleavage. This motion also can explain how 5'-dAdo· subsequently forms the organometallic intermediate Ω.

摘要

规范的自由基-腺苷甲硫氨酸(SAM)酶的催化涉及电子转移(ET)从[4Fe-4S]到 SAM,生成 RS 自由基,该自由基经历 S-C5'键的区域选择性均裂还原裂解,生成 5'-Ado·自由基。然而,低温光诱导的 S-C 键裂解具有区域选择性地生成 5'-Ado·或·CH,实际上,RS 酶中的三个 SAM S-C 键都可以区域选择性地裂解。这种多样性突出了一个长期存在的核心问题:在 SAM 还原时,是什么控制区域选择性的均裂 S-C 键裂解?我们在这里提供了一个意想不到的答案,这个答案是基于我们的观察,即在多个规范的 RS 酶中,光诱导的 S-C 键裂解揭示了两种酶类:在一种酶中,光解形成 5'-Ado·,而在另一种酶中,它形成·CH。裂解的 S-C 键的身份与 SAM 核糖构象相关,但与硫鎓中心相对于[4Fe-4S]簇的定位和取向无关。我们已经认识到,还原后的-SAM RS 自由基是一个()态,其反键未配对电子在一个轨道双重态中,这使 RS Jahn-Teller(JT)活性化,因此易受振动诱导的变形。活性位点力诱导 JT 变形,将奇数电子局域在单个优先 S-C 反键中,该反键发生区域选择性裂解。在光解裂解中,这些力通过控制核糖构象起作用,并通过 S-C5'键传递到硫,但在催化过程中,热诱导的构象变化使从簇铁进行 ET 成为可能,从而产生特定选择 S-C5'用于裂解的额外主要力。这种运动也可以解释 5'-Ado·随后如何形成有机金属中间体Ω。