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木兰类植物七个物种中 基因家族的全基因组鉴定及在 中的表达分析

Genome-Wide Identification of the Gene Family in Seven Species of Magnoliids and Expression Analysis in .

作者信息

Liu Xuedie, Liao Xing-Yu, Zheng Yu, Zhu Meng-Jia, Yu Xia, Jiang Yu-Ting, Zhang Diyang, Ma Liang, Xu Xin-Yu, Liu Zhong-Jian, Lan Siren

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at Colleage of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Plants (Basel). 2020 Dec 24;10(1):21. doi: 10.3390/plants10010021.

Abstract

The gene family, specific to seed plants, encodes a class of transcription factors in the lamina maintenance and development of lateral organs. Magnoliids are sisters to the clade-containing eudicots and monocots, which have rapidly diversified among the common ancestors of these three lineages. However, prior to this study, information on the function of the genes in magnoliids was extremely limited to the third major clades and the early diverging lineage of Mesangiospermae. In this study, the sum of 55 genes including five genes in , six in , eight in , 22 in , and 14 in clade were identified from seven magnoliid plants. Sequence analysis showed that all encoded YABBY protein sequences possess the highly conserved YABBY domain and C2C2 zinc-finger domain. Gene and protein structure analysis indicates that a certain number of exons were highly conserved and similar in the same class, and genes encode proteins of 71-392 amino acids and an open reading frame of 216-1179 bp in magnoliids. Additionally, the predicted molecular weight and isoelectric point of YABBY proteins in three species ranged from 7689.93 to 43578.13 and from 5.33 to 9.87, respectively. Meanwhile, the gene homolog expression of was detected at a temporal and spatial level during various developmental stages of leaf and reproductive tissues. This research could provide a brief overview of gene family evolution and its differential expression in magnoliids. Therefore, this comprehensive diversification analysis would provide a new insight into further understanding of the function of genes in seven magnoliids.

摘要

这个基因家族是种子植物特有的,在侧生器官的叶片维持和发育过程中编码一类转录因子。木兰类植物是包含真双子叶植物和单子叶植物的分支的姐妹类群,这两个类群在这三个谱系的共同祖先中迅速分化。然而,在本研究之前,关于木兰类植物中该基因功能的信息极其有限,仅限于第三大类群和中被子植物的早期分化谱系。在本研究中,从七种木兰类植物中鉴定出了55个该基因,其中包括木兰科的5个基因、番荔枝科的6个基因、肉豆蔻科的8个基因、樟科的22个基因和莲叶桐科的14个基因。序列分析表明所有编码的YABBY蛋白序列都具有高度保守的YABBY结构域和C2C2锌指结构域。基因和蛋白质结构分析表明,同一类中一定数量的外显子高度保守且相似,木兰类植物中的该基因编码71 - 392个氨基酸的蛋白质,开放阅读框为216 - 1179 bp。此外,三种物种中YABBY蛋白预测分子量和等电点分别为7689.93至43578.13和5.33至9.87。同时,在叶片和生殖组织的各个发育阶段,对该基因同源物的表达进行了时空水平检测。本研究可为木兰类植物中该基因家族的进化及其差异表达提供简要概述。因此,这种全面的多样化分析将为进一步了解七种木兰类植物中基因的功能提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e9/7824534/8ef94a451f43/plants-10-00021-g001.jpg

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