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合成DNA聚(氨基2dA-dT)双链体在高盐和醇水溶液中的构象。

Conformation of the synthetic DNA poly(amino2dA-dT) duplex in high-salt and aqueous alcohol solutions.

作者信息

Vorlícková M, Sági J, Szabolcs A, Szemzö A, Otvös L, Kypr J

机构信息

Institute of Biophysics, Czechoslovak Academy of Sciences, Brno.

出版信息

Nucleic Acids Res. 1988 Jan 11;16(1):279-89. doi: 10.1093/nar/16.1.279.

Abstract

It has previously been demonstrated by other workers that the duplex of a synthetic DNA poly(amino2dA-dT) undergoes a salt-induced conformational isomerization. We show in the present work using circular dichroism that the same isomerization is induced in poly(amino2dA-dT) by various alcohols. The isomerization was originally identified as the B-to-Z and then B-to-A conformational transition of DNA but we demonstrate that the high-salt or alcohol conformation of poly (amino2dA-dT) is the non Z-DNA zig-zag double helix we have previously observed with poly(dA-dT) and called X-DNA. X-DNA is a cesium cation specific conformation of poly(dA-dT) while no similar cation specificity is observed with poly(amino2dA-dT). Thus it appears that the extra amino group attached to A and cesium cations make the same thing; they probably dehydrate the double helix minor groove and relieve its conformational variability. Poly(amino2dA-dT) is exceptionally stable in X-DNA and conditions inducing it are mild, which opens the door to assess its molecular structure.

摘要

此前其他研究人员已证明,合成DNA聚(氨基2dA - dT)的双链体会发生盐诱导的构象异构化。我们在当前工作中利用圆二色性表明,各种醇类也能在聚(氨基2dA - dT)中诱导相同的异构化。这种异构化最初被确定为DNA的B型到Z型,然后是B型到A型的构象转变,但我们证明聚(氨基2dA - dT)的高盐或醇类构象是我们之前在聚(dA - dT)中观察到并称为X - DNA的非Z - DNA锯齿状双螺旋。X - DNA是聚(dA - dT)的一种铯阳离子特异性构象,而在聚(氨基2dA - dT)中未观察到类似的阳离子特异性。因此,似乎连接在A上的额外氨基和铯阳离子起到了相同的作用;它们可能使双螺旋小沟脱水并减轻其构象变异性。聚(氨基2dA - dT)在X - DNA中异常稳定,且诱导其形成的条件较为温和,这为评估其分子结构打开了大门。

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J Mol Biol. 1980 Oct 15;143(1):49-72. doi: 10.1016/0022-2836(80)90124-2.
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