Hameg Radhia, Arteta Tomás A, Landin Mariana, Gallego Pedro P, Barreal M Esther
Applied Plant & Soil Biology, Department of Plant Biology and Soil Sciences, Faculty of Biology, University of Vigo, Vigo, Spain.
CITACA - Agri-Food Research and Transfer Cluster, University of Vigo, Ourense, Spain.
Front Plant Sci. 2020 Dec 23;11:554905. doi: 10.3389/fpls.2020.554905. eCollection 2020.
The design of plant tissue culture media remains a complicated task due to the interactions of many factors. The use of computer-based tools is still very scarce, although they have demonstrated great advantages when used in large dataset analysis. In this study, design of experiments (DOE) and three machine learning (ML) algorithms, artificial neural networks (ANNs), fuzzy logic, and genetic algorithms (GA), were combined to decipher the key minerals and predict the optimal combination of salts for hardy kiwi () micropropagation. A five-factor experimental design of 33 salt treatments was defined using DOE. Later, the effect of the ionic variations generated by these five factors on three morpho-physiological growth responses - shoot number (SN), shoot length (SL), and leaves area (LA) - and on three quality responses - shoots quality (SQ), basal callus (BC), and hyperhydricity (H) - were modeled and analyzed simultaneously. Neurofuzzy logic models demonstrated that just 11 ions (five macronutrients (N, K, P, Mg, and S) and six micronutrients (Cl, Fe, B, Mo, Na, and I)) out of the 18 tested explained the results obtained. The rules "IF - THEN" allow for easy deduction of the concentration range of each ion that causes a positive effect on growth responses and guarantees healthy shoots. Secondly, using a combination of ANNs-GA, a new optimized medium was designed and the desired values for each response parameter were accurately predicted. Finally, the experimental validation of the model showed that the optimized medium significantly promotes SQ and reduces BC and H compared to standard media generally used in plant tissue culture. This study demonstrated the suitability of computer-based tools for improving plant micropropagation: (i) DOE to design more efficient experiments, saving time and cost; (ii) ANNs combined with fuzzy logic to understand the cause-effect of several factors on the response parameters; and (iii) ANNs-GA to predict new mineral media formulation, which improve growth response, avoiding morpho-physiological abnormalities. The lack of predictability on some response parameters can be due to other key media components, such as vitamins, PGRs, or organic compounds, particularly glycine, which could modulate the effect of the ions and needs further research for confirmation.
由于多种因素的相互作用,植物组织培养基的设计仍然是一项复杂的任务。基于计算机的工具的使用仍然非常稀少,尽管它们在用于大型数据集分析时已显示出巨大优势。在本研究中,将实验设计(DOE)与三种机器学习(ML)算法,即人工神经网络(ANN)、模糊逻辑和遗传算法(GA)相结合,以解读关键矿物质并预测用于硬叶猕猴桃微繁殖的盐的最佳组合。使用DOE定义了一个包含33种盐处理的五因素实验设计。随后,同时对这五个因素产生的离子变化对三种形态生理生长响应——芽数(SN)、芽长(SL)和叶面积(LA)——以及三种品质响应——芽质量(SQ)、基部愈伤组织(BC)和玻璃化(H)——的影响进行建模和分析。神经模糊逻辑模型表明,在测试的18种离子中,仅有11种离子(五种大量元素(N、K、P、Mg和S)和六种微量元素(Cl、Fe、B、Mo、Na和I))能够解释所获得的结果。“如果-那么”规则便于轻松推断出对生长响应产生积极影响并确保芽健康的每种离子的浓度范围。其次,使用ANN-GA组合设计了一种新的优化培养基,并准确预测了每个响应参数的期望值。最后,模型的实验验证表明,与植物组织培养中通常使用的标准培养基相比,优化后的培养基显著促进了SQ并降低了BC和H。本研究证明了基于计算机的工具在改善植物微繁殖方面的适用性:(i)DOE用于设计更高效的实验,节省时间和成本;(ii)ANN与模糊逻辑相结合以理解多种因素对响应参数的因果关系;(iii)ANN-GA用于预测新的矿物质培养基配方,改善生长响应,避免形态生理异常。某些响应参数缺乏可预测性可能归因于其他关键培养基成分,如维生素、植物生长调节剂或有机化合物,特别是甘氨酸,其可能调节离子的作用,需要进一步研究加以证实。