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.的完整叶绿体基因组序列及系统发育分析

Complete chloroplast genome sequence and phylogenetic analysis of .

作者信息

Niu Ying-Feng, Li Kai-Xiong, Liu Jin

机构信息

Yunnan Institute of Tropical Crops, Jinghong, China.

出版信息

Mitochondrial DNA B Resour. 2020 Oct 9;5(3):3540-3542. doi: 10.1080/23802359.2020.1829131.

Abstract

is native to South and Central America which has many phytochemical and pharmacological activities suggesting a wide range of clinical application in lieu of cancer chemotherapy. This study provides abundant genomic data for the genetic relationship study, germplasm resources evaluation and varieties selection of . The complete chloroplast genome of was sequenced, assembled, and annotated in this study. The genome size was 201,906 bp and was divided into four regions: a large single-copy region of 69,650 bp, a small single-copy region of 3,014 bp, and two inverted repeat regions of 64,621 bp. A total number of 164 genes were annotated, including 115 protein-coding genes, one pseudogene, 40 tRNA genes, and eight rRNA genes. In terms of gene function, the 164 genes were divided into four major groups: genes for self-replication, photosynthesis, unknown function, and other genes. A maximum likelihood tree based on the chloroplast genome sequences of 24 plant species was constructed. The result of phylogenetic analysis showed that had the closest relationship with .

摘要

原产于南美洲和中美洲,具有多种植物化学和药理活性,表明在癌症化疗替代方面具有广泛的临床应用。本研究为其遗传关系研究、种质资源评估和品种选择提供了丰富的基因组数据。本研究对其完整叶绿体基因组进行了测序、组装和注释。基因组大小为201,906 bp,分为四个区域:一个69,650 bp的大单拷贝区域、一个3,014 bp的小单拷贝区域和两个64,621 bp的反向重复区域。共注释了164个基因,包括115个蛋白质编码基因、1个假基因、40个tRNA基因和8个rRNA基因。在基因功能方面,164个基因分为四大类:自我复制基因、光合作用基因、功能未知基因和其他基因。基于24种植物叶绿体基因组序列构建了最大似然树。系统发育分析结果表明,与关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d19/7782357/f1aeea900d03/TMDN_A_1829131_F0001_B.jpg

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