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绿豆(Vigna radiata L. Wilczek)中凝集素受体样激酶(LecRLK)基因的全基因组鉴定和特征分析。

Genome-wide identification and characterization of Lectin receptor-like kinase (LecRLK) genes in mungbean (Vigna radiata L. Wilczek).

机构信息

Department of Biotechnology, School of Life Sciences, Mahatma Gandhi Central University, Motihari, Bihar, 845401, India.

Department of Biotechnology, Yeungnam University, Gyeongsan, 38541, South Korea.

出版信息

J Appl Genet. 2021 May;62(2):223-234. doi: 10.1007/s13353-021-00613-8. Epub 2021 Jan 20.

Abstract

Lectins are a diverse group of proteins found throughout plant species. Numerous lectins are involved in many important processes such as organogenesis, defense mechanism, signaling, and stress response. Although the mungbean whole genome sequence has been published, distribution, diversification, and gene structure of lectin genes in mungbean are still unknown. A total of 73 putative lectin genes with kinase domain have been identified through BLAST and HMM profiling. Furthermore, these sequences could be classified into three families, such as G-type, L-type, and C-type VrLecRLKs. 59 out of 73 VrLecRLKs were distributed on to 11 chromosomes, whereas rest could not be anchored onto any specific chromosome. Gene structure analysis revealed a varying number of exons in 73 VrLecRLK genes. Gene ontology annotations were grouped into three categories like biological processes, cellular components and molecular functions, which were associated with signaling pathways, defense responses, transferase activity, binding activity, and kinase activity. The comprehensive and systematic studies of LecRLK genes family provides a reference and foundation for further functional analysis of VrLecRLK genes in mungbean.

摘要

凝集素是一类广泛存在于植物物种中的蛋白质。许多凝集素参与许多重要的过程,如器官发生、防御机制、信号转导和应激反应。尽管绿豆的全基因组序列已经公布,但绿豆凝集素基因的分布、多样化和基因结构仍不清楚。通过 BLAST 和 HMM 分析,共鉴定出 73 个具有激酶结构域的假定凝集素基因。此外,这些序列可以分为 G 型、L 型和 C 型 VrLecRLKs 三种类型。73 个 VrLecRLKs 中有 59 个分布在 11 条染色体上,而其余的则不能锚定在任何特定的染色体上。基因结构分析显示,73 个 VrLecRLK 基因中的外显子数量各不相同。基因本体注释分为生物过程、细胞成分和分子功能三个类别,与信号通路、防御反应、转移酶活性、结合活性和激酶活性有关。LecRLK 基因家族的全面系统研究为进一步分析绿豆 VrLecRLK 基因的功能提供了参考和基础。

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