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（埃克尔）A. 德坎多尔（夹竹桃科）的完整质体基因组序列

The complete plastome sequence of (Eckl.) A. DC. (Apocynaceae).

作者信息

Jo Sangjin, Kim Hoe-Won, Kim Young-Kee, Cheon Se-Hwan, Kim Ki-Joong

机构信息

Division of Life Sciences, Korea University, Seoul, Korea.

出版信息

Mitochondrial DNA B Resour. 2017 Jan 16;2(1):26-28. doi: 10.1080/23802359.2016.1233468.

DOI:10.1080/23802359.2016.1233468
PMID:33473704
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800814/
Abstract

In this study, we determined the complete plastome sequence of (Eckl.) A. DC. (Apocynaceae) (NCBI acc. no. KX364402). The gene order and structure of the plastome are similar to those of a typical angiosperm. The complete plastome is 155,297 bp in length, and consists of a large single-copy region of 85,586 bp and a small single-copy region of 18,131 bp, which are separated by two inverted repeats of 25,792 bp. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes and 4 are rRNA genes. Sixteen genes contained one intron and two genes have two introns. The average A-T content of the plastome is 62.0%. A total of 31 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that is a member of the paraphyletic subfamily Rauvolfioideae of Apocynaceae. The sister group relationship of to the Apocynoideae-Asclepiadoideae clade is supported by 100% bootstrap values.

摘要

在本研究中，我们测定了（Eckl.）A. DC.（夹竹桃科）的完整质体基因组序列（NCBI登录号：KX364402）。该质体基因组的基因顺序和结构与典型被子植物的相似。完整的质体基因组长度为155,297 bp，由一个85,586 bp的大单拷贝区域和一个18,131 bp的小单拷贝区域组成，这两个区域被两个25,792 bp的反向重复序列隔开。质体基因组包含113个基因，其中79个是蛋白质编码基因，30个是tRNA基因，4个是rRNA基因。16个基因含有一个内含子，两个基因有两个内含子。质体基因组的平均A-T含量为62.0%。在基因组内共鉴定出31个简单序列重复位点。系统发育分析表明，是夹竹桃科副系罗布麻亚科的一个成员。与夹竹桃亚科-萝摩亚科分支的姐妹群关系得到了100%的自展支持值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/deac/7800814/b4b64b22a123/TMDN_A_1233468_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/deac/7800814/b4b64b22a123/TMDN_A_1233468_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/deac/7800814/b4b64b22a123/TMDN_A_1233468_F0001_C.jpg

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