College of Grassland Science, Nanjing Agricultural University, Nanjing 210095, China.
Int J Mol Sci. 2021 Jan 21;22(3):1044. doi: 10.3390/ijms22031044.
Calcium-dependent protein kinase (CDPK or CPK) and CDPK-related kinase (CRK) play an important role in plant growth, development, and adaptation to environmental stresses. However, their gene families had been yet inadequately investigated in . In this study, six genes were computationally identified, they were classified into five groups with based on phylogenetic relationships. Six pairs of segmental duplications were observed in and genes and the ratio, an indicator of selection pressure, was below 0.310, indicating that these gene pairs underwent strong purifying selection. -acting elements of morphogenesis, multiple hormone responses, and abiotic stresses were predicted in the promoter region. The spatial expression of and displays diversity. The expression of and could be regulated by various stresses. MtCDPK4, 14, 16, 22, and MtCRK6 harbor both N-myristoylation site and palmitoylation site and were anchored on plasma membrane, while MtCDPK7, 9, and 15 contain no or only one N-acylation site and were distributed in cytosol and nucleus, suggesting that the N-terminal acylation sites play a key role in subcellular localization of MtCDPKs and MtCRKs. In summary, comprehensive characterization of and provide a subset of candidate genes for further functional analysis and genetic improvement against drought, cold, salt and biotic stress.
钙依赖型蛋白激酶(CDPK 或 CPK)和 CDPK 相关激酶(CRK)在植物的生长、发育和适应环境胁迫中起着重要作用。然而,它们的基因家族在 中尚未得到充分研究。在这项研究中,通过计算方法鉴定了 6 个 基因,根据系统发育关系将它们分为 5 组。在 和 基因中观察到 6 对片段重复, 比值(选择压力的一个指标)低于 0.310,表明这些基因对经历了强烈的纯化选择。在启动子区域预测到与形态发生、多种激素反应和非生物胁迫相关的 作用元件。 和 的空间表达表现出多样性。 和 的表达可以受到各种胁迫的调控。MtCDPK4、14、16、22 和 MtCRK6 既具有 N-豆蔻酰化位点又具有棕榈酰化位点,锚定在质膜上,而 MtCDPK7、9 和 15 不含或仅含有一个 N-酰化位点,分布在细胞质和细胞核中,表明 N 端酰化位点在 MtCDPKs 和 MtCRKs 的亚细胞定位中起着关键作用。总之,对 和 的全面表征提供了一组候选基因,可用于进一步的功能分析和遗传改良,以应对干旱、寒冷、盐和生物胁迫。