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肠道微生物组关联代谢组学在肝脏疾病中的研究进展:原理、机制与应用。

Recent Advances of Microbiome-Associated Metabolomics Profiling in Liver Disease: Principles, Mechanisms, and Applications.

机构信息

Institute for Liver and Digestive Diseases, Hallym University, Chuncheon 24252, Korea.

Department of Biological Sciences, Integrated Biological Science, and Institute of Systems Biology, Pusan National University, Busan 46241, Korea.

出版信息

Int J Mol Sci. 2021 Jan 25;22(3):1160. doi: 10.3390/ijms22031160.

Abstract

Advances in high-throughput screening of metabolic stability in liver and gut microbiota are able to identify and quantify small-molecule metabolites (metabolome) in different cellular microenvironments that are closest to their phenotypes. Metagenomics and metabolomics are largely recognized to be the "-omics" disciplines for clinical therapeutic screening. Here, metabolomics activity screening in liver disease (LD) and gut microbiomes has significantly delivered the integration of metabolomics data (i.e., a set of endogenous metabolites) with metabolic pathways in cellular environments that can be tested for biological functions (i.e., phenotypes). A growing literature in LD and gut microbiomes reports the use of metabolites as therapeutic targets or biomarkers. Although growing evidence connects liver fibrosis, cirrhosis, and hepatocellular carcinoma, the genetic and metabolic factors are still mainly unknown. Herein, we reviewed proof-of-concept mechanisms for metabolomics-based LD and gut microbiotas' role from several studies (nuclear magnetic resonance, gas/lipid chromatography, spectroscopy coupled with mass spectrometry, and capillary electrophoresis). A deeper understanding of these axes is a prerequisite for optimizing therapeutic strategies to improve liver health.

摘要

高通量筛选肝和肠道微生物群的代谢稳定性的进展,能够识别和量化不同细胞微环境中最接近其表型的小分子代谢物(代谢组)。宏基因组学和代谢组学在很大程度上被认为是临床治疗筛选的“组学”学科。在这里,肝脏疾病(LD)和肠道微生物组中的代谢组学活性筛选显著实现了将代谢组学数据(即一组内源性代谢物)与细胞环境中的代谢途径整合起来,这些途径可以用于测试生物功能(即表型)。越来越多的关于 LD 和肠道微生物组的文献报告了将代谢物用作治疗靶点或生物标志物。尽管越来越多的证据将肝纤维化、肝硬化和肝细胞癌联系起来,但遗传和代谢因素仍主要未知。本文综述了来自几项研究(核磁共振、气相/脂质色谱、与质谱联用的光谱学以及毛细管电泳)的基于代谢组学的 LD 和肠道微生物组作用的概念验证机制。更深入地了解这些轴是优化治疗策略以改善肝脏健康的前提。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9974/7865944/6a6bf28c02c5/ijms-22-01160-g001.jpg

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