Olajide Atinuke M, Chen Shu, LaPointe Gisèle
CRIFS, Department of Food Science, University of Guelph, Ontario, ON, Canada.
Agriculture and Food Laboratory, Laboratory Services Division, University of Guelph, Ontario, ON, Canada.
Front Microbiol. 2021 Jan 11;11:596828. doi: 10.3389/fmicb.2020.596828. eCollection 2020.
As close relatives, is often wrongly identified as . In this study, two genetic markers are presented based on and from the fengycin operon of to rapidly distinguish it from . The fengycin operon is one of the few present in but absent in up to date. Using these markers, two presumptive isolates each were recovered from a set of isolates previously identified as by Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) or identified only to genus level as by 16S ribosomal RNA (rRNA) gene sequencing, respectively. Whole genome sequencing of the four isolates confirmed their identity as having the closest similarity with ATCC 9945a (GenBank: CP005965.1) with a 7,682 k-mer score and 97.22% Average Nucleotide Identity (ANI). ANI of 100% suggests that the four isolates are highly similar. Further analysis will be necessary to determine if finer differences exist among these isolates at the level of single nucleotide polymorphisms.
作为近亲,[具体物种A]常常被错误地鉴定为[具体物种B]。在本研究中,基于来自[具体物种A]丰原素操纵子的[基因A]和[基因B]提出了两种遗传标记,以便快速将其与[具体物种B]区分开来。丰原素操纵子是[具体物种A]中少数存在但截至目前在[具体物种B]中不存在的操纵子之一。利用这些标记,分别从一组先前通过基质辅助激光解吸电离飞行时间质谱(MALDI-TOF)鉴定为[具体物种B]或仅通过16S核糖体RNA(rRNA)基因测序鉴定到属水平为[具体物种B]的分离株中各回收了两株疑似[具体物种A]的分离株。这四株分离株的全基因组测序证实了它们的身份为[具体物种A],与[具体物种A]ATCC 9945a(GenBank:CP005965.1)具有最接近的相似性,k-mer得分7682,平均核苷酸同一性(ANI)为97.22%。100%的ANI表明这四株分离株高度相似。有必要进行进一步分析以确定这些分离株在单核苷酸多态性水平上是否存在更细微的差异。