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对来自日本伴侣犬的产超广谱或 AmpC β-内酰胺酶的大肠杆菌分离株的全基因组分析。

Whole-genome analyses of extended-spectrum or AmpC β-lactamase-producing Escherichia coli isolates from companion dogs in Japan.

机构信息

Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Osaka, Japan.

Asian Health Science Research Institiute, Osaka Prefecture University, Izumisano, Osaka, Japan.

出版信息

PLoS One. 2021 Feb 5;16(2):e0246482. doi: 10.1371/journal.pone.0246482. eCollection 2021.

DOI:10.1371/journal.pone.0246482
PMID:33544781
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7864471/
Abstract

The emergence and global spread of extended-spectrum or AmpC β-lactamase (ESBL/AmpC)-producing Enterobacteriaceae in companion animals have led to the hypothesis that companion animals might be reservoirs for cross-species transmission because of their close contact with humans. However, current knowledge in this field is limited; therefore, the role of companion animals in cross-species transmission remains to be elucidated. Herein, we studied ESBL/AmpC-producing Enterobacteriaceae, Escherichia coli in particular, isolated from extraintestinal sites and feces of companion dogs. Whole-genome sequencing analysis revealed that (i) extraintestinal E. coli isolates were most closely related to those isolated from feces from the same dog, (ii) chromosomal sequences in the ST131/C1-M27 clade isolated from companion dogs were highly similar to those in the ST131/C1-M27 clade of human origin, (iii) certain plasmids, such as IncFII/pMLST F1:A2:B20/blaCTX-M-27, IncI1/pMLST16/blaCTX-M-15, or IncI1/blaCMY-2 from dog-derived E. coli isolates, shared high homology with those from several human-derived Enterobacteriaceae, (iv) chromosomal blaCTX-M-14 was identified in the ST38 isolate from a companion dog, and (v) eight out of 14 tested ESBL/AmpC-producing E. coli isolates (i.e., ST131, ST68, ST405, and ST998) belonged to the human extraintestinal pathogenic E. coli (ExPEC) group. All of the bla-coding plasmids that were sequenced genome-wide were capable of horizontal transfer. These results suggest that companion dogs can spread ESBL/AmpC-producing ExPEC via their feces. Furthermore, at least some ESBL/AmpC-producing ExPECs and bla-coding plasmids can be transmitted between humans and companion dogs. Thus, companion dogs can act as an important reservoir for ESBL/AmpC-producing E. coli in the community.

摘要

在伴侣动物中出现并在全球传播的扩展谱或 AmpC β-内酰胺酶(ESBL/AmpC)-产生肠杆菌科,导致了这样一种假设,即由于伴侣动物与人类密切接触,它们可能是种间传播的储主。然而,目前在这一领域的知识有限;因此,伴侣动物在种间传播中的作用仍有待阐明。在此,我们研究了从伴侣犬的肠道外部位和粪便中分离出的 ESBL/AmpC 产生的肠杆菌科,特别是大肠杆菌。全基因组测序分析表明:(i)肠道外大肠杆菌分离株与来自同一犬粪便的分离株最密切相关,(ii)从伴侣犬分离出的 ST131/C1-M27 群的染色体序列与人源 ST131/C1-M27 群非常相似,(iii)某些质粒,如来自犬源大肠杆菌分离株的 IncFII/pMLST F1:A2:B20/blaCTX-M-27、IncI1/pMLST16/blaCTX-M-15 或 IncI1/blaCMY-2,与来自几种人源肠杆菌科的质粒高度同源,(iv)在来自伴侣犬的 ST38 分离株中发现了染色体 blaCTX-M-14,(v)在 14 株测试的 ESBL/AmpC 产生大肠杆菌分离株中,有 8 株(即 ST131、ST68、ST405 和 ST998)属于人类肠道外致病性大肠杆菌(ExPEC)组。全基因组测序的所有 bla 编码质粒都能够进行水平转移。这些结果表明,伴侣犬可以通过粪便传播 ESBL/AmpC 产生的 ExPEC。此外,至少一些 ESBL/AmpC 产生的 ExPEC 和 bla 编码质粒可以在人类和伴侣犬之间传播。因此,伴侣犬可以作为社区中 ESBL/AmpC 产生大肠杆菌的重要储主。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/50af18ac64fb/pone.0246482.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/1fdd1a92d10b/pone.0246482.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/5274507ec86f/pone.0246482.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/ce528c70ff1b/pone.0246482.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/50af18ac64fb/pone.0246482.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/1fdd1a92d10b/pone.0246482.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/5274507ec86f/pone.0246482.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/ce528c70ff1b/pone.0246482.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0889/7864471/50af18ac64fb/pone.0246482.g004.jpg

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