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针对从墨西哥草药中分离出的天然产物进行抗COVID-19的计算机模拟筛选。

In Silico Screening of Natural Products Isolated from Mexican Herbal Medicines against COVID-19.

作者信息

Rivero-Segura Nadia A, Gomez-Verjan Juan C

机构信息

Dirección de Investigación, Instituto Nacional de Geriatría, Ciudad de Mexico 10200, Mexico.

出版信息

Biomolecules. 2021 Feb 4;11(2):216. doi: 10.3390/biom11020216.

DOI:10.3390/biom11020216
PMID:33557097
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7913859/
Abstract

The COVID-19 pandemic has already taken the lives of more than 2 million people worldwide, causing several political and socio-economic disturbances in our daily life. At the time of publication, there are non-effective pharmacological treatments, and vaccine distribution represents an important challenge for all countries. In this sense, research for novel molecules becomes essential to develop treatments against the SARS-CoV-2 virus. In this context, Mexican natural products have proven to be quite useful for drug development; therefore, in the present study, we perform an in silico screening of 100 compounds isolated from the most commonly used Mexican plants, against the SARS-CoV-2 virus. As results, we identify ten compounds that meet leadlikeness criteria (emodin anthrone, kaempferol, quercetin, aesculin, cichoriin, luteolin, matricin, riolozatrione, monocaffeoyl tartaric acid, aucubin). According to the docking analysis, only three compounds target the key proteins of SARS-CoV-2 (quercetin, riolozatrione and cichoriin), but only one appears to be safe (cichoriin). ADME (absorption, distribution, metabolism and excretion) properties and the physiologically based pharmacokinetic (PBPK) model show that cichoriin reaches higher lung levels (100 mg/Kg, IV); therefore, it may be considered in developing therapeutic tools.

摘要

新冠疫情已在全球夺走了超过200万人的生命,给我们的日常生活带来了诸多政治和社会经济动荡。在本文发表之时,尚无有效的药物治疗方法,疫苗分发对所有国家来说都是一项重大挑战。从这个意义上讲,研发新型分子对于开发针对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的治疗方法至关重要。在此背景下,墨西哥的天然产物已被证明对药物开发非常有用;因此,在本研究中,我们对从墨西哥最常用植物中分离出的100种化合物进行了针对SARS-CoV-2病毒的计算机模拟筛选。结果,我们鉴定出了十种符合类先导物标准的化合物(大黄素蒽酮、山奈酚、槲皮素、七叶苷、菊苣酸、木犀草素、母菊天蓝烃、里奥洛扎曲酮、单咖啡酰酒石酸、桃叶珊瑚苷)。根据对接分析,只有三种化合物靶向SARS-CoV-2的关键蛋白(槲皮素、里奥洛扎曲酮和菊苣酸),但只有一种似乎是安全的(菊苣酸)。药物代谢动力学(吸收、分布、代谢和排泄)特性以及基于生理学的药代动力学(PBPK)模型表明,菊苣酸在肺部达到更高水平(100毫克/千克,静脉注射);因此,在开发治疗工具时可以考虑使用它。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/76a525184a0a/biomolecules-11-00216-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/32311509788a/biomolecules-11-00216-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/d61517d2b44e/biomolecules-11-00216-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/fc7abf6eaca6/biomolecules-11-00216-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/c6599883d241/biomolecules-11-00216-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/76a525184a0a/biomolecules-11-00216-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/32311509788a/biomolecules-11-00216-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/d61517d2b44e/biomolecules-11-00216-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/fc7abf6eaca6/biomolecules-11-00216-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/c6599883d241/biomolecules-11-00216-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4d/7913859/76a525184a0a/biomolecules-11-00216-g005.jpg

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本文引用的文献

1
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2
Recent progresses in marine microbial-derived antiviral natural products.海洋微生物来源抗病毒天然产物的最新进展。
Arch Pharm Res. 2020 Dec;43(12):1215-1229. doi: 10.1007/s12272-020-01286-3. Epub 2020 Nov 21.
3
COVID-19 update: The race to therapeutic development.新冠疫情动态更新:治疗研发竞赛。
预测生物活性天然产物毒性的计算方法:方法学的简要综述
Food Sci Biotechnol. 2024 Sep 9;34(2):299-305. doi: 10.1007/s10068-024-01701-1. eCollection 2025 Jan.
4
Prevalence, under-reporting, and epidemiological surveillance of COVID-19 in the Araguaína City of Brazil.巴西阿雷格里港市的 COVID-19 流行情况、漏报情况和流行病学监测。
PLoS One. 2024 Jun 5;19(6):e0300191. doi: 10.1371/journal.pone.0300191. eCollection 2024.
5
Therapeutic implications of quercetin and its derived-products in COVID-19 protection and prophylactic.槲皮素及其衍生物在新冠病毒防护和预防方面的治疗意义。
Heliyon. 2024 Apr 30;10(9):e30080. doi: 10.1016/j.heliyon.2024.e30080. eCollection 2024 May 15.
6
Applications of some advanced sequencing, analytical, and computational approaches in medicinal plant research: a review.一些先进的测序、分析和计算方法在药用植物研究中的应用:综述。
Mol Biol Rep. 2023 Dec 20;51(1):23. doi: 10.1007/s11033-023-09057-1.
7
Unraveling the Neuroprotective Effect of Natural Bioactive Compounds Involved in the Modulation of Ischemic Stroke by Network Pharmacology.基于网络药理学解析参与调节缺血性中风的天然生物活性化合物的神经保护作用
Pharmaceuticals (Basel). 2023 Sep 28;16(10):1376. doi: 10.3390/ph16101376.
8
In Silico Models for Anti-COVID-19 Drug Discovery: A Systematic Review.用于抗COVID-19药物发现的计算机模拟模型:一项系统综述。
Adv Pharmacol Pharm Sci. 2023 Jun 15;2023:4562974. doi: 10.1155/2023/4562974. eCollection 2023.
9
Exploring Scoring Function Space: Developing Computational Models for Drug Discovery.探索评分函数空间:开发药物发现的计算模型。
Curr Med Chem. 2024;31(17):2361-2377. doi: 10.2174/0929867330666230321103731.
10
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Int J Mol Sci. 2023 Jan 6;24(2):1134. doi: 10.3390/ijms24021134.
Drug Resist Updat. 2020 Dec;53:100733. doi: 10.1016/j.drup.2020.100733. Epub 2020 Oct 24.
4
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J Toxicol Sci. 2020;45(11):695-700. doi: 10.2131/jts.45.695.
5
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Antibiotics (Basel). 2020 Sep 15;9(9):606. doi: 10.3390/antibiotics9090606.
6
An inflammatory cytokine signature predicts COVID-19 severity and survival.炎症细胞因子特征可预测 COVID-19 严重程度和存活情况。
Nat Med. 2020 Oct;26(10):1636-1643. doi: 10.1038/s41591-020-1051-9. Epub 2020 Aug 24.
7
Antiproliferative and photoprotective activities of the extracts and compounds from Calea fruticosa.金莲花属植物提取物及化合物的抗增殖和光保护活性。
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COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19.COVID-19 对接服务器:一个对接小分子、肽和抗体的元对接服务器,针对 COVID-19 的潜在靶点。
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9
Monoclonal antibody as a potential anti-COVID-19.单克隆抗体作为一种有潜力的抗 COVID-19 药物。
Biomed Pharmacother. 2020 Sep;129:110337. doi: 10.1016/j.biopha.2020.110337. Epub 2020 Jun 4.
10
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Molecules. 2020 Apr 14;25(8):1800. doi: 10.3390/molecules25081800.