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一种新型噬菌体HCF1感染[具体对象]的表型特征及全基因组分析

Phenotypic Characterization and Whole-Genome Analysis of a Novel Bacteriophage HCF1 Infecting and .

作者信息

Kumar Prince, Meghvansi Mukesh K, Kamboj Dev V

机构信息

Biotechnology Division, Defence Research and Development Establishment, Gwalior, India.

出版信息

Front Microbiol. 2021 Jan 25;12:644013. doi: 10.3389/fmicb.2021.644013. eCollection 2021.

Abstract

species often occur in sewage, food, soil, wastewater, and in the intestinal tract of animals and humans. spp. cause urinary tract infections (UTIs) and infantile meningitis in humans. Due to the presence of plasmid-encoded resistance genes, spp. are often resistant to many antibiotics. In this study, virus HCF1, a novel virulent bacteriophage capable of killing and , was isolated from the sewage water. The isolated bacteriophage was characterized with respect to transmission electron microscopy, one-step growth curve, host range, efficacy, storage stability, and environmental stress tolerance. The one-step growth curve analysis revealed that the latent period of HCF1 was 30 min and the estimated burst size was 121 plaque-forming units (PFU) per bacterial cell. Host range testing indicated that the HCF1 was specific to the genus. efficacy assay in the effluent of an anaerobic biodigester showed that the HCF1 completely eliminated the host within 4 and 5 h at MOI:100 and MOI:10, respectively, thereby indicating its potential for combating infections. The isolated bacteriophage is considerably stable and tolerant to environmental stress. Furthermore, the complete genome of HCF1 was sequenced using Oxford Nanopore sequencing and the data were subjected to detailed bioinformatic analyses. NCBI-BLASTn analysis revealed that the HCF1 genome had a query coverage of 15-21% and a maximum similarity of 77.27-78.49% with 11 bacteriophages of the family. Detailed bioinformatic analysis of the genome profile suggests that HCF1 is a novel belonging to the subfamily of the family.

摘要

该物种常见于污水、食物、土壤、废水中,以及动物和人类的肠道内。[具体物种]会引发人类的尿路感染(UTIs)和婴儿脑膜炎。由于存在质粒编码的抗性基因,[具体物种]通常对多种抗生素具有抗性。在本研究中,从污水中分离出了一种新型烈性噬菌体——HCF1病毒,它能够杀死[具体物种1]和[具体物种2]。对分离出的噬菌体进行了透射电子显微镜观察、一步生长曲线测定、宿主范围检测、杀菌效果评估、储存稳定性测试以及环境胁迫耐受性测试。一步生长曲线分析表明,HCF1的潜伏期为30分钟,每个细菌细胞的估计裂解量为121个噬菌斑形成单位(PFU)。宿主范围测试表明,HCF1对[具体属]具有特异性。在厌氧生物消化器流出物中的杀菌效果测定表明,在感染复数(MOI)为100和10时,HCF1分别在4小时和5小时内完全清除了宿主,从而表明其具有对抗[具体物种]感染的潜力。分离出的噬菌体相当稳定,且对环境胁迫具有耐受性。此外,使用牛津纳米孔测序技术对HCF1的全基因组进行了测序,并对数据进行了详细的生物信息学分析。NCBI - BLASTn分析显示,HCF1基因组与[具体噬菌体家族]的11种噬菌体的查询覆盖率为15 - 21%,最大相似度为77.2

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f5f/7868345/f0eb26a0a778/fmicb-12-644013-g001.jpg

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