Suppr超能文献

液相色谱-质谱联用非靶向代谢组学评估了草铵膦处理转基因抗草铵膦(GR)水牛草(钝叶草)后的延迟反应。

LC-MS untargeted metabolomics assesses the delayed response of glufosinate treatment of transgenic glufosinate resistant (GR) buffalo grasses (Stenotaphrum secundatum L.).

作者信息

Boonchaisri Siriwat, Rochfort Simone, Stevenson Trevor, Dias Daniel A

机构信息

Division of Biology, School of Sciences, University of Phayao, Phayao, 56000, Thailand.

School of Science, RMIT University, Bundoora, VIC, 3083, Australia.

出版信息

Metabolomics. 2021 Feb 20;17(3):28. doi: 10.1007/s11306-021-01776-5.

Abstract

INTRODUCTION

Glufosinate resistant (GR) buffalo grasses were genetically modified to resist the broad-spectrum herbicide, glufosinate by inserting a novel pat gene into its genome. This modification results in a production of additional phosphinothricin acetyltransferase (PAT) to detoxify the deleterious effects of glufosinate. The GR grasses and its associated herbicide form a modern, weeding program, to eradicate obnoxious weeds in turf lawn without damaging the grasses at relatively low costs and labor. As with several principal crops which are genetically modified to improve agricultural traits, biosafety of the GR buffalo grasses is inevitably expected to become a public concern. For the first time, we had previously examined the metabolome of glufosinate-resistant buffalo grasses, using a GC-MS untargeted approach to assess the risk of GR as well as identify any pleotropic effects arising from the genetically modification process. In this paper, an untargeted high-resolution LC-MS (LC-HRMS) untargeted metabolomics approach was carried out to complement our previous findings with respect to GR and wild type (WT) buffalo grasses.

OBJECTIVE

One of the major aims of this present work was to compare GR to WT buffalo grasses by including the detection of the secondary metabolome and determine any unprecedented metabolic changes.

METHODS

Eight-week old plants of 4 GR buffalo grasses, (93-1A, 93-2B, 93-3 C and 93-5A) and 3 wild type varieties (WT 8-4A, WT 9-1B and WT 9-1B) were submerged in either 5 % v/v of glufosinate or distilled water 3 days prior to a LC-HRMS based untargeted metabolomics analysis (glufosinate-treated or control, samples, respectively). An Ultra-High-Performance Liquid Chromatography (UHPLC) system coupled to a Velos Pro Orbitrap mass spectrometer system was employed to holistically measure the primary and secondary metabolome of both GR and WT buffalo grasses either treated with or without glufosinate and subsequently apply several bioinformatic tools including the automated pathway analysis algorithm, mummichog.

RESULTS

LC-HRMS untargeted based metabolomics clearly identified that the global metabolite pools of both GR and WT cultivars were highly similar, providing strong, supporting evidence of substantial equivalence between the GR and WT varieties. These findings indicate that if any associated risks to these GR grasses were somehow present, the risk would be within those acceptable ranges present in the WT. Additionally, mummichog-based pathway analysis indicated that phenylalanine metabolism and the TCA cycle were significantly impacted by glufosinate treatment in the WT cultivar. It was possible that alterations in the relative concentrations of several intermediates in these pathways were likely due to glufosinate-induced production of secondary metabolites to enhance plant defense mechanisms against herbicidal stress at the expense of primary metabolism.

CONCLUSIONS

GR buffalo grasses were found to be near identical to its WT comparator based on this complementary LC-HRMS based untargeted metabolomics. Therefore, these results further support the safe use of these GR buffalo grasses with substantial evidence. Interestingly, despite protected by PAT, GR buffalo grasses still demonstrated the response to glufosinate treatment by up-regulating some secondary metabolite-related pathways.

摘要

引言

抗草铵膦(GR)野牛草通过将一个新的pat基因插入其基因组而进行基因改造,以抵抗广谱除草剂草铵膦。这种改造导致产生额外的膦丝菌素乙酰转移酶(PAT),以解除草铵膦的有害影响。GR草及其相关除草剂形成了一个现代除草方案,以相对低成本和劳动力根除草坪中的有害杂草,而不损害草。与几种为改善农业性状而进行基因改造的主要作物一样,GR野牛草的生物安全性不可避免地会成为公众关注的问题。我们之前首次使用气相色谱 - 质谱非靶向方法检测了抗草铵膦野牛草的代谢组,以评估GR的风险并识别基因改造过程中产生的任何多效性影响。在本文中,我们采用非靶向高分辨率液相色谱 - 质谱(LC - HRMS)非靶向代谢组学方法,以补充我们之前关于GR和野生型(WT)野牛草的研究结果。

目的

本研究的主要目的之一是通过检测次生代谢组来比较GR野牛草和WT野牛草,并确定任何前所未有的代谢变化。

方法

在基于LC - HRMS的非靶向代谢组学分析(分别为草铵膦处理或对照样品)前3天,将4种GR野牛草(分别为93 - 1A、93 - 2B、93 - 3C和93 - 5A)和3种野生型品种(WT 8 - 4A、WT 9 - 1B和WT 9 - 1B)的8周龄植株分别浸泡在5% v/v的草铵膦或蒸馏水中。使用超高效液相色谱(UHPLC)系统与Velos Pro轨道阱质谱仪系统,全面测量经草铵膦处理或未处理的GR和WT野牛草的初生和次生代谢组,随后应用包括自动通路分析算法mummichog在内的多种生物信息学工具。

结果

基于LC - HRMS的非靶向代谢组学清楚地表明,GR和WT品种的整体代谢物库高度相似,为GR和WT品种之间的实质等同性提供了有力的支持证据。这些发现表明,如果这些GR草存在任何相关风险,该风险将在WT中存在的可接受范围内。此外,基于mummichog的通路分析表明,苯丙氨酸代谢和三羧酸循环在WT品种中受到草铵膦处理的显著影响。这些通路中几种中间体相对浓度的变化可能是由于草铵膦诱导次生代谢物的产生,以增强植物对除草剂胁迫的防御机制,而以初生代谢为代价。

结论

基于这种补充性的基于LC - HRMS的非靶向代谢组学,发现GR野牛草与其WT对照几乎相同。因此,这些结果以充分的证据进一步支持了这些GR野牛草的安全使用。有趣的是,尽管受到PAT的保护,GR野牛草仍然通过上调一些与次生代谢物相关的通路来表现出对草铵膦处理的反应。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验