Mahmoud Huda, Jose Liny, Eapen Susan
Department of Biological Sciences, Faculty of Science, Kuwait University, P.O. Box (5969), Safat (13060), Kuwait.
Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004720. Epub 2021 Feb 25.
A Gram-stain-negative, rod and rod-curved shaped motile bacterium designated strain S25 was obtained from benthic sediment collected near the Kubbar Island coral reefs south of Kuwait. Phenotypic analysis revealed that strain S25 was slightly halophilic, mesophilic and facultative anaerobic, fermenting d-glucose, d-ribose, d-mannose, d-mannitol, maltose, fructose, gentiobiose, cellobiose, melibiose, trehalose and sucrose. It was positive for oxidase and indole production and negative for arginine dihydrolase and lysine and ornithine decarboxylases. It contained C 7/C 6 (summed feature 3), C ω7 (summed feature 8) and C as the major fatty acids. Strain S25 grew optimally at 30 °C and pH 8 in the presence of 3 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA sequences revealed that strain S25 is related to species of the genus , having 99.15 % similarity to '' AK16, 99.08 % to 96-237 and 98.66 % to IMCC 5001. The DNA G+C content was 48.8 mol% and the full genome analysis for the strain S25 showed that the bacterium has a genome size of 5 158 621 bp and contains 4730 predicted protein-encoding genes. The average nucleotide identity values between the S25 genome and the genomes of its nearest matches ranged between 81.39 and 94.16 %. The strain was distinguishable from the phylogenetically related genera through differences in several phenotypic properties. On the basis of the phenotypic, phylogenetic and genetic data, strain S25 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain of is S25 (=DSM 28878=LMG 28315).
从科威特南部库巴尔岛珊瑚礁附近采集的底栖沉积物中获得了一株革兰氏染色阴性、杆状和杆状弯曲的运动细菌,命名为菌株S25。表型分析表明,菌株S25为轻度嗜盐、嗜温兼性厌氧菌,能发酵d-葡萄糖、d-核糖、d-甘露糖、d-甘露醇、麦芽糖、果糖、龙胆二糖、纤维二糖、蜜二糖、海藻糖和蔗糖。氧化酶和吲哚产生试验呈阳性,精氨酸双水解酶、赖氨酸和鸟氨酸脱羧酶试验呈阴性。它以C 7/C 6(总特征3)、C ω7(总特征8)和C作为主要脂肪酸。菌株S25在30 °C、pH 8和3%(w/v)NaCl存在的条件下生长最佳。基于16S rRNA序列的系统发育分析表明,菌株S25与该属的物种相关,与'' AK16的相似性为99.15%,与96-237的相似性为99.08%,与IMCC 5001的相似性为98.66%。DNA G+C含量为48.8 mol%,对菌株S25的全基因组分析表明,该细菌的基因组大小为 5 158 621 bp,包含4730个预测的蛋白质编码基因。S25基因组与其最接近匹配基因组之间的平均核苷酸同一性值在81.39%至94.16%之间。通过几个表型特征的差异,该菌株可与系统发育相关属区分开来。基于表型、系统发育和遗传数据,菌株S25代表该属中的一个新物种,为此提出新物种名称 sp. nov.。的模式菌株为S25(=DSM 28878=LMG 28315)。