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嗜热硫歧化菌属,一种新型的嗜热化能自养硫歧化菌,能够通过硫的歧化作用进行生长,并提议在硝化螺旋菌门中建立新的分类单元,以重新分类硫代脱硫弧菌属。

Dissulfurispira thermophila gen. nov., sp. nov., a thermophilic chemolithoautotroph growing by sulfur disproportionation, and proposal of novel taxa in the phylum Nitrospirota to reclassify the genus Thermodesulfovibrio.

机构信息

The Institute of Low Temperature Science, Hokkaido University. Kita-19, Nishi-8, Kita-ku, Sapporo 060-0819, Japan.

The Institute of Low Temperature Science, Hokkaido University. Kita-19, Nishi-8, Kita-ku, Sapporo 060-0819, Japan.

出版信息

Syst Appl Microbiol. 2021 Apr;44(2):126184. doi: 10.1016/j.syapm.2021.126184. Epub 2021 Feb 11.

Abstract

Recently, presence of sulfur-disproportionating bacterial species belonging to the phylum Nitrospirota was indicated by an enrichment culture-based study. In the present study, a strain representing that species was isolated and characterized. The strain, strain T55J, was isolated from a microbial mat of a hot spring. The cells were motile, and rods or spiral forms with width of 0.32-0.49 μm. The strain grew autotrophically, only by disproportionation of thiosulfate or elemental sulfur. Growth was observed at a temperature range of 25-60°C, with optimum growth at 53-57°C. The pH range for growth was 5.5-9.0, with optimum pH of 7.0-8.0. The complete genome of strain T55J is composed of a circular chromosome (2,370,875 bp), with G+C content of 38.7%. Thermodesulfovibrio hydrogeniphilus Hdr5 showed the highest sequence similarity of the 16S rRNA gene to strain T55J, but it was only 88.2%. On the basis of the phylogenetic and physiologic properties, strain T55J (= DSM 110365=NBRC 114245) is proposed as type strain of a novel species in a new genus, Dissulfurispira thermophila gen. nov., sp. nov. To assign the new genus to family and higher taxa, its taxonomic position was assessed by genome-based phylogeny. As a result, it was shown that the novel genus and Thermodesulfovibrio belong to different families. It was also shown that Thermodesulfovibrio should be reclassified at levels from class to family and creation of some novel taxa is required. Based on these results, Thermodesulfovibrionia class. nov., Thermodesulfovibrionales ord. nov., Thermodesulfovibrionaceae fam. nov., and Dissulfurispiraceae fam. nov. are proposed.

摘要

最近,通过富集培养的研究表明,存在属于硝化螺旋菌门的硫歧化细菌种。在本研究中,分离并表征了代表该种的菌株。该菌株,菌株 T55J,是从温泉微生物垫中分离出来的。细胞是能动的,棒状或螺旋状,宽度为 0.32-0.49μm。该菌株可以通过硫代硫酸盐或元素硫的歧化作用进行自养生长。在 25-60°C 的温度范围内观察到生长,最佳生长温度为 53-57°C。生长的 pH 值范围为 5.5-9.0,最佳 pH 值为 7.0-8.0。菌株 T55J 的全基因组由一个圆形染色体(2,370,875 bp)组成,G+C 含量为 38.7%。Thermodesulfovibrio hydrogeniphilus Hdr5 与菌株 T55J 的 16S rRNA 基因的序列相似性最高,但也只有 88.2%。基于系统发育和生理特性,菌株 T55J(=DSM 110365=NBRC 114245)被提议为一个新属、新种的模式菌株,命名为嗜热硫歧化螺旋菌属。nov. 为了确定新属在科和更高分类单元中的位置,通过基于基因组的系统发育评估了其分类地位。结果表明,新属和 Thermodesulfovibrio 属于不同的科。还表明,Thermodesulfovibrio 应该在从纲到科的水平上重新分类,并且需要创建一些新的分类群。基于这些结果,提出了 Thermodesulfovibrionia 纲。nov.,Thermodesulfovibrionales 目。nov.,Thermodesulfovibrionaceae 科。nov. 和 Dissulfurispiraceae 科。nov.。

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