• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种用于三硝基苯的非经验分子间力场及其在晶体结构预测中的应用。

A non-empirical intermolecular force-field for trinitrobenzene and its application in crystal structure prediction.

作者信息

Aina Alex A, Misquitta Alston J, Price Sarah L

机构信息

Department of Chemistry, University College London, 20 Gordon St., London WC1H 0AJ, United Kingdom.

School of Physics and Astronomy and The Thomas Young Centre for Theory and Simulation of Materials at Queen Mary, University of London, London E1 4NS, United Kingdom.

出版信息

J Chem Phys. 2021 Mar 7;154(9):094123. doi: 10.1063/5.0043746.

DOI:10.1063/5.0043746
PMID:33685142
Abstract

An anisotropic atom-atom distributed intermolecular force-field (DIFF) for rigid trinitrobenzene (TNB) is developed using distributed multipole moments, dipolar polarizabilities, and dispersion coefficients derived from the charge density of the isolated molecule. The short-range parameters of the force-field are fitted to first- and second-order symmetry-adapted perturbation theory dimer interaction energy calculations using the distributed density-overlap model to guide the parameterization of the short-range anisotropy. The second-order calculations are used for fitting the damping coefficients of the long-range dispersion and polarization and also for relaxing the isotropic short-range coefficients in the final model, DIFF-srL2(rel). We assess the accuracy of the unrelaxed model, DIFF-srL2(norel), and its equivalent without short-range anisotropy, DIFF-srL0(norel), as these models are easier to derive. The model potentials are contrasted with empirical models for the repulsion-dispersion fitted to organic crystal structures with multipoles of iterated stockholder atoms (ISAs), FIT(ISA,L4), and with Gaussian Distributed Analysis (GDMA) multipoles, FIT(GDMA,L4), commonly used in modeling organic crystals. The potentials are tested for their ability to model the solid state of TNB. The non-empirical models provide more reasonable relative lattice energies of the three polymorphs of TNB and propose more sensible hypothetical structures than the empirical force-field (FIT). The DIFF-srL2(rel) model successfully has the most stable structure as one of the many structures that match the coordination sphere of form III. The neglect of the conformational flexibility of the nitro-groups is a significant approximation. This methodology provides a step toward force-fields capable of representing all phases of a molecule in molecular dynamics simulations.

摘要

利用从孤立分子的电荷密度导出的分布多极矩、偶极极化率和色散系数,开发了一种用于刚性三硝基苯(TNB)的各向异性原子-原子分布式分子间力场(DIFF)。力场的短程参数通过使用分布密度重叠模型拟合到一阶和二阶对称适应微扰理论二聚体相互作用能计算中,以指导短程各向异性的参数化。二阶计算用于拟合长程色散和极化的阻尼系数,也用于在最终模型DIFF-srL2(rel)中放宽各向同性短程系数。我们评估了未放宽模型DIFF-srL2(norel)及其无短程各向异性的等效模型DIFF-srL0(norel)的准确性,因为这些模型更容易推导。将模型势与用于拟合具有迭代股东原子(ISA)多极的有机晶体结构的排斥-色散经验模型FIT(ISA,L4)以及常用于有机晶体建模的高斯分布分析(GDMA)多极FIT(GDMA,L4)进行对比。测试了这些势对TNB固态建模的能力。非经验模型提供了比经验力场(FIT)更合理的TNB三种多晶型的相对晶格能,并提出了更合理的假设结构。DIFF-srL2(rel)模型成功地将最稳定的结构作为与晶型III配位球匹配的众多结构之一。忽略硝基的构象灵活性是一个重大近似。这种方法为能够在分子动力学模拟中表示分子所有相的力场迈出了一步。

相似文献

1
A non-empirical intermolecular force-field for trinitrobenzene and its application in crystal structure prediction.一种用于三硝基苯的非经验分子间力场及其在晶体结构预测中的应用。
J Chem Phys. 2021 Mar 7;154(9):094123. doi: 10.1063/5.0043746.
2
From dimers to the solid-state: Distributed intermolecular force-fields for pyridine.从二聚体到固态:吡啶的分布式分子间力场。
J Chem Phys. 2017 Oct 28;147(16):161722. doi: 10.1063/1.4999789.
3
Determination of structure and properties of molecular crystals from first principles.从第一性原理出发确定分子晶体的结构和性质。
Acc Chem Res. 2014 Nov 18;47(11):3266-74. doi: 10.1021/ar500275m. Epub 2014 Oct 29.
4
A nonempirical anisotropic atom-atom model potential for chlorobenzene crystals.一种用于氯苯晶体的非经验性各向异性原子-原子模型势。
J Am Chem Soc. 2003 Dec 31;125(52):16434-43. doi: 10.1021/ja0383625.
5
Modelling organic crystal structures using distributed multipole and polarizability-based model intermolecular potentials.使用分布式多极和基于极化率的模型分子间势能对有机晶体结构进行建模。
Phys Chem Chem Phys. 2010 Aug 14;12(30):8478-90. doi: 10.1039/c004164e. Epub 2010 Jul 7.
6
The Use of Anisotropic Potentials in Modeling Water and Free Energies of Hydration.各向异性势在水合作用的水及自由能建模中的应用
J Chem Theory Comput. 2010 May 11;6(5):1590-607. doi: 10.1021/ct900693q.
7
An optimized intermolecular force field for hydrogen-bonded organic molecular crystals using atomic multipole electrostatics.一种使用原子多极静电学的用于氢键有机分子晶体的优化分子间力场。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Aug 1;72(Pt 4):477-87. doi: 10.1107/S2052520616007708. Epub 2016 Jul 16.
8
Classical Pauli repulsion: An anisotropic, atomic multipole model.经典泡利排斥:各向异性原子多极模型。
J Chem Phys. 2019 Feb 28;150(8):084104. doi: 10.1063/1.5081060.
9
Ab Initio Atom-Atom Potentials Using CamCASP: Theory and Application to Many-Body Models for the Pyridine Dimer.使用CamCASP的从头算原子-原子势:理论及对吡啶二聚体多体模型的应用
J Chem Theory Comput. 2016 Sep 13;12(9):4184-208. doi: 10.1021/acs.jctc.5b01241. Epub 2016 Aug 23.
10
Polarizable Water Potential Derived from a Model Electron Density.由模型电子密度得出的可极化水势能。
J Chem Theory Comput. 2021 Nov 9;17(11):7056-7084. doi: 10.1021/acs.jctc.1c00628. Epub 2021 Oct 26.

引用本文的文献

1
Accurate and efficient machine learning interatomic potentials for finite temperature modelling of molecular crystals.用于分子晶体有限温度建模的准确高效机器学习原子间势。
Chem Sci. 2025 May 23. doi: 10.1039/d5sc01325a.
2
Quantification of Anisotropy in Exchange and Dispersion Interactions: A Simple Model for Physics-Based Force Fields.交换与色散相互作用中各向异性的量化:基于物理的力场的简单模型
J Phys Chem Lett. 2024 Oct 3;15(39):9974-9978. doi: 10.1021/acs.jpclett.4c02034. Epub 2024 Sep 24.
3
Martini on the Rocks: Can a Coarse-Grained Force Field Model Crystals?
马丁尼在岩石上:粗粒度力场模型能否模拟晶体?
J Phys Chem Lett. 2024 Feb 1;15(4):1079-1088. doi: 10.1021/acs.jpclett.4c00012. Epub 2024 Jan 23.