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新种,一种从南极土壤中分离出的黄杆菌。

sp. nov., a flavobacterium isolated from Antarctic soil.

作者信息

Ren Xingtao, Jiang Peiqiang, Liu Zuoyang, Liang Yuzi, Li Jing

机构信息

College of Marine Life Sciences, Ocean University of China, Qingdao, Shandong, 266003, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004753. Epub 2021 Mar 16.

Abstract

A Gram-stain-negative, aerobic, non-spore-forming, rod-shaped, non-motile, yellow-pigmented bacteria, designated strain G5-32, belonging to the genus was isolated from soil collected in the Antarctic. The strain was identified using a polyphasic taxonomic approach. The strain grew in the presence of 0-5% (w/v) NaCl (optimum, 1%), at pH 6.0-9.0 (optimum, pH 8.0) and at 4-28 °C (optimum, 20 °C). The predominant menaquinone was MK-6 (99.4%). The major fatty acids were anteiso-C (28.2%), iso-C (16.4%), summed feature 9 (comprising iso-C 9 and/or 10-methyl C; 10.6%) and iso-C (5.9%). A phylogenetic tree based on 16S rRNA gene sequences showed that strain G5-32 formed a lineage within the genus with the closest phylogenetic neighbours HMD1043, DSM 23145, DSM 17048 and NCTC 13525 (97.9, 97.8, 97.8 and 98.0 % 16S rRNA gene sequence similarity, respectively). The ANI values between strain G5-32 and DSM 17048, DSM 23145, NCTC 13525 and HMD1043 were 90.9, 82.6, 77.1 and 76.3%. Concurrently, digital DNA-DNA hybridization values of strain G5-32 assessed against DSM 17048, DSM 23145, NCTC 13525 and HMD1043 were 42.3, 25.9, 21.7 and 21.3%, respectively. Based on phenotypic, phylogenetic and genotypic data, a novel species, sp. nov., is proposed. The type strain is G5-32 (=CCTCC AA 2019083=KCTC 72766).

摘要

从南极采集的土壤中分离出一株革兰氏阴性、需氧、无芽孢形成、杆状、不运动、产黄色色素的细菌,命名为菌株G5-32,属于该属。采用多相分类方法对该菌株进行鉴定。该菌株在0-5%(w/v)NaCl(最适浓度为1%)、pH 6.0-9.0(最适pH为8.0)和4-28°C(最适温度为20°C)条件下生长。主要的甲基萘醌是MK-6(99.4%)。主要脂肪酸为anteiso-C(28.2%)、iso-C(16.4%)、总和特征9(包括iso-C 9和/或10-甲基C;10.6%)和iso-C(5.9%)。基于16S rRNA基因序列构建的系统发育树表明,菌株G5-32在该属内形成了一个分支,与最接近的系统发育邻居HMD1043、DSM 23145、DSM 17048和NCTC 13525的16S rRNA基因序列相似性分别为97.9%、97.8%、97.8%和98.0%。菌株G5-32与DSM 17048、DSM 23145、NCTC 13525和HMD1043之间的ANI值分别为90.9%、82.6%、77.1%和76.3%。同时,菌株G5-32与DSM 17048、DSM 23145、NCTC 13525和HMD1043的数字DNA-DNA杂交值分别为42.3%、25.9%、21.7%和21.3%。基于表型、系统发育和基因型数据,提出了一个新物种,新种。模式菌株为G5-32(=CCTCC AA 2019083=KCTC 72766)。

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