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LNDb 挑战赛:自动肺癌患者管理。

LNDb challenge on automatic lung cancer patient management.

机构信息

Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.

Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal; Faculty of Engineering of the University of Porto (FEUP), Porto, Portugal.

出版信息

Med Image Anal. 2021 May;70:102027. doi: 10.1016/j.media.2021.102027. Epub 2021 Mar 5.

DOI:10.1016/j.media.2021.102027
PMID:33740739
Abstract

Lung cancer is the deadliest type of cancer worldwide and late detection is the major factor for the low survival rate of patients. Low dose computed tomography has been suggested as a potential screening tool but manual screening is costly and time-consuming. This has fuelled the development of automatic methods for the detection, segmentation and characterisation of pulmonary nodules. In spite of promising results, the application of automatic methods to clinical routine is not straightforward and only a limited number of studies have addressed the problem in a holistic way. With the goal of advancing the state of the art, the Lung Nodule Database (LNDb) Challenge on automatic lung cancer patient management was organized. The LNDb Challenge addressed lung nodule detection, segmentation and characterization as well as prediction of patient follow-up according to the 2017 Fleischner society pulmonary nodule guidelines. 294 CT scans were thus collected retrospectively at the Centro Hospitalar e Universitrio de So Joo in Porto, Portugal and each CT was annotated by at least one radiologist. Annotations comprised nodule centroids, segmentations and subjective characterization. 58 CTs and the corresponding annotations were withheld as a separate test set. A total of 947 users registered for the challenge and 11 successful submissions for at least one of the sub-challenges were received. For patient follow-up prediction, a maximum quadratic weighted Cohen's kappa of 0.580 was obtained. In terms of nodule detection, a sensitivity below 0.4 (and 0.7) at 1 false positive per scan was obtained for nodules identified by at least one (and two) radiologist(s). For nodule segmentation, a maximum Jaccard score of 0.567 was obtained, surpassing the interobserver variability. In terms of nodule texture characterization, a maximum quadratic weighted Cohen's kappa of 0.733 was obtained, with part solid nodules being particularly challenging to classify correctly. Detailed analysis of the proposed methods and the differences in performance allow to identify the major challenges remaining and future directions - data collection, augmentation/generation and evaluation of under-represented classes, the incorporation of scan-level information for better decision-making and the development of tools and challenges with clinical-oriented goals. The LNDb Challenge and associated data remain publicly available so that future methods can be tested and benchmarked, promoting the development of new algorithms in lung cancer medical image analysis and patient follow-up recommendation.

摘要

肺癌是全球最致命的癌症类型,而晚期发现是患者生存率低的主要因素。低剂量计算机断层扫描已被提议作为一种潜在的筛查工具,但手动筛查既昂贵又耗时。这推动了自动检测、分割和描述肺结节的方法的发展。尽管取得了有希望的结果,但自动方法在临床常规中的应用并不简单,只有少数研究全面解决了这个问题。为了推动该领域的发展,组织了肺癌患者管理的自动肺结节数据库(LungNoduleDatabase,LNDb)挑战赛。LNDb 挑战赛涉及肺结节检测、分割和特征描述以及根据 2017 年 Fleischner 学会肺结节指南预测患者随访。因此,从葡萄牙波尔图的 CentroHospitalar e Universitrio de So Joo 回顾性地收集了 294 份 CT 扫描,每一份 CT 都由至少一名放射科医生进行注释。注释包括结节质心、分割和主观特征描述。58 份 CT 和相应的注释被保留为单独的测试集。共有 947 名用户注册参加了挑战赛,收到了 11 项成功提交的至少一项子挑战的结果。对于患者随访预测,获得了最大二次加权 Cohen's kappa 值为 0.580。在结节检测方面,对于至少一名(和两名)放射科医生识别的结节,在每扫描 1 个假阳性的情况下,灵敏度低于 0.4(和 0.7)。在结节分割方面,获得了最大 Jaccard 分数 0.567,超过了观察者间的变异性。在结节纹理特征描述方面,获得了最大二次加权 Cohen's kappa 值为 0.733,部分实性结节的分类尤其具有挑战性。对所提出方法的详细分析以及性能差异可以确定仍然存在的主要挑战和未来方向——数据收集、增强/生成和代表性不足类别的评估、扫描级信息的纳入以做出更好的决策以及开发具有临床目标的工具和挑战。LNDb 挑战赛及相关数据仍然公开可用,以便未来的方法可以进行测试和基准测试,从而促进肺癌医学图像分析和患者随访推荐中新技术的发展。

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