Alamdari Sarah, Pfaendtner Jim
Dept. of Chemical Engineering, University of Washington, Seattle 98195-1750.
Mol Syst Des Eng. 2020 Mar 1;5(3):620-631. doi: 10.1039/c9me00158a. Epub 2019 Dec 9.
One proposed mechanism of implant fouling is attributed to the nonspecific adsorption of non-collagenous bone matrix proteins (NCPs) onto a newly implanted interface. With the goal of capturing the fundamental mechanistic and thermodynamic forces that govern changes in these NCP recognition domains as a function of γ-carboxyglutamic acid (Gla) post-translational modification and surface chemistry, we probe the adsorption process of the most commonly occurring NCP, osteocalcin, onto a mineral and metal oxide surface. Here, we apply two enhanced sampling methods to independently probe the effects of post-translational modification and peptide structure on adsorption. First, well-tempered metadynamics was used to capture the binding of acetyl and N-methylamide capped glutamic acid and Gla single amino acids onto crystalline hydroxyapatite and titania model surfaces at physiological pH. Following this, parallel tempering metadynamics in the well-tempered ensemble (PTMetaD-WTE) was used to study adsorption of the α-1 domain of osteocalcin onto hydroxyapatite and titania. Simulations were performed for the α-1 domain of osteocalcin in both its fully decarboxylated (dOC) and fully carboxylated (OC) form. Our simulations find that increased charge density due to carboxylation results in increased interactions at the interface, and stronger adsorption of the single amino acids to both surfaces. Interestingly, the role of Gla in promoting compact and helical structure in the α-1 domain resulted in disparate binding modes at the two surfaces, which is attributed to differences in interfacial water behavior. Overall, this work provides a benchmark for understanding the mechanisms that drive adsorption of Gla-containing mineralizing proteins onto different surface chemistries.
一种关于植入物污染的推测机制归因于非胶原骨基质蛋白（NCPs）在新植入界面上的非特异性吸附。为了捕捉控制这些NCP识别域变化的基本机制和热力学力，这些变化是γ-羧基谷氨酸（Gla）翻译后修饰和表面化学的函数，我们探究了最常见的NCP骨钙素在矿物和金属氧化物表面的吸附过程。在这里，我们应用两种增强采样方法来独立探究翻译后修饰和肽结构对吸附的影响。首先，使用加权元动力学来捕捉乙酰基和N-甲基酰胺封端的谷氨酸和Gla单个氨基酸在生理pH值下与结晶羟基磷灰石和二氧化钛模型表面的结合。在此之后，使用加权系综中的并行回火元动力学（PTMetaD-WTE）来研究骨钙素α-1结构域在羟基磷灰石和二氧化钛上的吸附。对完全脱羧（dOC）和完全羧化（OC）形式的骨钙素α-1结构域进行了模拟。我们的模拟发现，羧化导致的电荷密度增加会导致界面处相互作用增加，以及单个氨基酸对两个表面的吸附更强。有趣的是，Gla在促进α-1结构域中紧密和螺旋结构方面的作用导致在两个表面上有不同的结合模式，这归因于界面水行为的差异。总体而言，这项工作为理解驱动含Gla矿化蛋白吸附到不同表面化学物质上的机制提供了一个基准。
