• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用开源描述符设计高通量毒代动力学模型参数的定量构效关系。

Designing QSARs for Parameters of High-Throughput Toxicokinetic Models Using Open-Source Descriptors.

机构信息

Office of Research and Development, Center for Computational Toxicology and Exposure, U.S. Environmental Protection Agency, 109 T.W. Alexander Drive, Research Triangle Park, North Carolina 27709, United States.

Office of Research and Development, National Exposure Research Laboratory, U.S. Environmental Protection Agency, 109 T.W. Alexander Drive, Research Triangle Park, Durham, North Carolina 27709, United States.

出版信息

Environ Sci Technol. 2021 May 4;55(9):6505-6517. doi: 10.1021/acs.est.0c06117. Epub 2021 Apr 15.

DOI:10.1021/acs.est.0c06117
PMID:33856768
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8548983/
Abstract

The intrinsic metabolic clearance rate (Cl) and the fraction of the chemical unbound in plasma () serve as important parameters for high-throughput toxicokinetic (TK) models, but experimental data are limited for many chemicals. Open-source quantitative structure-activity relationship (QSAR) models for both parameters were developed to offer reliable predictions for a diverse set of chemicals regulated under the U.S. law, including pharmaceuticals, pesticides, and industrial chemicals. As a case study to demonstrate their utility, model predictions served as inputs to the TK component of a risk-based prioritization approach based on bioactivity/exposure ratios (BERs), in which a BER < 1 indicates that exposures are predicted to exceed a biological activity threshold. When applied to a subset of the Tox21 screening library (6484 chemicals), we found that the proportion of chemicals with BER <1 was similar using either (1133/6484; 17.5%) or (148/848; 17.5%) parameters. Further, when considering only the chemicals in the Tox21 set with data, there was a high concordance of chemicals classified with either BER <1 or >1 using either or parameters (767/848, 90.4%). Thus, the presented QSARs may be suitable for prioritizing the risk posed by many chemicals for which measured TK data are lacking.

摘要

内在代谢清除率 (Cl) 和血浆中未结合的化学物质分数 () 是高通量毒代动力学 (TK) 模型的重要参数,但许多化学物质的实验数据有限。开发了这两个参数的开源定量构效关系 (QSAR) 模型,可为美国法规监管的多种化学物质提供可靠的预测,包括药物、农药和工业化学品。作为一个案例研究来证明它们的实用性,模型预测被用作基于生物活性/暴露比 (BER) 的风险优先排序方法的 TK 组件的输入,其中 BER < 1 表示预测暴露将超过生物活性阈值。当应用于 Tox21 筛选库的一个子集 (6484 种化学物质) 时,我们发现使用 (1133/6484;17.5%) 或 (148/848;17.5%) 参数,BER < 1 的化学物质比例相似。此外,当仅考虑 Tox21 集中具有 数据的化学物质时,使用 或 参数将化学物质分类为 BER < 1 或 > 1 的一致性很高(767/848,90.4%)。因此,提出的 QSAR 可用于优先考虑许多缺乏测量 TK 数据的化学物质所带来的风险。

相似文献

1
Designing QSARs for Parameters of High-Throughput Toxicokinetic Models Using Open-Source Descriptors.利用开源描述符设计高通量毒代动力学模型参数的定量构效关系。
Environ Sci Technol. 2021 May 4;55(9):6505-6517. doi: 10.1021/acs.est.0c06117. Epub 2021 Apr 15.
2
Correction to Designing QSARs for Parameters of High Throughput Toxicokinetic Models Using Open-Source Descriptors.《使用开源描述符设计高通量毒物动力学模型参数的定量构效关系的勘误》
Environ Sci Technol. 2021 Oct 19;55(20):14329-14330. doi: 10.1021/acs.est.1c05924. Epub 2021 Oct 5.
3
Using Chemical Structure Information to Develop Predictive Models for Toxicokinetic Parameters to Inform High-throughput Risk-assessment.利用化学结构信息开发毒代动力学参数预测模型以指导高通量风险评估。
Comput Toxicol. 2020 Nov 1;16. doi: 10.1016/j.comtox.2020.100136.
4
Assessing Toxicokinetic Uncertainty and Variability in Risk Prioritization.评估风险优先排序中的毒代动力学不确定性和变异性。
Toxicol Sci. 2019 Dec 1;172(2):235-251. doi: 10.1093/toxsci/kfz205.
5
An Intuitive Approach for Predicting Potential Human Health Risk with the Tox21 10k Library.一种使用Tox21 10k文库预测潜在人类健康风险的直观方法。
Environ Sci Technol. 2017 Sep 19;51(18):10786-10796. doi: 10.1021/acs.est.7b00650. Epub 2017 Sep 6.
6
Evaluating In Vitro-In Vivo Extrapolation of Toxicokinetics.评估毒代动力学的体外-体内外推。
Toxicol Sci. 2018 May 1;163(1):152-169. doi: 10.1093/toxsci/kfy020.
7
Identifying populations sensitive to environmental chemicals by simulating toxicokinetic variability.通过模拟毒物动力学变异性来识别对环境化学品敏感的人群。
Environ Int. 2017 Sep;106:105-118. doi: 10.1016/j.envint.2017.06.004. Epub 2017 Jun 16.
8
predictions of the human pharmacokinetics/toxicokinetics of 65 chemicals from various classes using conformal prediction methodology.利用共形预测方法对来自不同类别的 65 种化学物质的人体药代动力学/毒代动力学进行预测。
Xenobiotica. 2022 Feb;52(2):113-118. doi: 10.1080/00498254.2022.2049397. Epub 2022 Mar 16.
9
High-throughput PBTK models for to extrapolation.用于从到外推的高通量 PBTK 模型。
Expert Opin Drug Metab Toxicol. 2021 Aug;17(8):903-921. doi: 10.1080/17425255.2021.1935867. Epub 2021 Jun 15.
10
Performance evaluation of the GastroPlus software tool for prediction of the toxicokinetic parameters of chemicals.GastroPlus 软件工具预测化学物质毒代动力学参数性能评估。
SAR QSAR Environ Res. 2018 Nov;29(11):875-893. doi: 10.1080/1062936X.2018.1518928. Epub 2018 Oct 5.

引用本文的文献

1
Enabling transparent toxicokinetic modeling for public health risk assessment.实现用于公共卫生风险评估的透明毒代动力学建模。
PLoS One. 2025 Apr 16;20(4):e0321321. doi: 10.1371/journal.pone.0321321. eCollection 2025.
2
The environmental neuroactive chemicals list of prioritized substances for human biomonitoring and neurotoxicity testing: A database and high-throughput toxicokinetics approach.用于人体生物监测和神经毒性测试的优先物质环境神经活性化学物质清单:一个数据库和高通量毒物动力学方法。
Environ Res. 2025 Feb 1;266:120537. doi: 10.1016/j.envres.2024.120537. Epub 2024 Dec 4.
3
Incorporating new approach methods (NAMs) data in dose-response assessments: The future is now!将新方法(NAMs)数据纳入剂量反应评估:未来已来!
J Toxicol Environ Health B Crit Rev. 2025 Jan 2;28(1):28-62. doi: 10.1080/10937404.2024.2412571. Epub 2024 Oct 10.
4
Category-Based Toxicokinetic Evaluations of Data-Poor Per- and Polyfluoroalkyl Substances (PFAS) using Gas Chromatography Coupled with Mass Spectrometry.使用气相色谱-质谱联用技术对数据匮乏的全氟和多氟烷基物质(PFAS)进行基于类别的毒代动力学评估。
Toxics. 2023 May 16;11(5):463. doi: 10.3390/toxics11050463.
5
Application of Cell Painting for chemical hazard evaluation in support of screening-level chemical assessments.细胞染色在支持筛选水平化学评估中的化学危害评价中的应用。
Toxicol Appl Pharmacol. 2023 Jun 1;468:116513. doi: 10.1016/j.taap.2023.116513. Epub 2023 Apr 11.
6
A Machine Learning Model to Estimate Toxicokinetic Half-Lives of Per- and Polyfluoro-Alkyl Substances (PFAS) in Multiple Species.一种用于估计多种物种中全氟和多氟烷基物质(PFAS)毒代动力学半衰期的机器学习模型。
Toxics. 2023 Jan 20;11(2):98. doi: 10.3390/toxics11020098.
7
Identifying xenobiotic metabolites with prediction tools and LCMS suspect screening analysis.使用预测工具和液相色谱-质谱联用可疑物筛查分析来鉴定外源性代谢物。
Front Toxicol. 2023 Jan 18;5:1051483. doi: 10.3389/ftox.2023.1051483. eCollection 2023.
8
From Protein Sequence to Structure: The Next Frontier in Cross-Species Extrapolation for Chemical Safety Evaluations.从蛋白质序列到结构:化学安全评估中跨物种外推的下一个前沿。
Environ Toxicol Chem. 2023 Feb;42(2):463-474. doi: 10.1002/etc.5537. Epub 2023 Jan 16.
9
Estimating provisional margins of exposure for data-poor chemicals using high-throughput computational methods.使用高通量计算方法估算数据匮乏化学品的临时暴露限值。
Front Pharmacol. 2022 Oct 7;13:980747. doi: 10.3389/fphar.2022.980747. eCollection 2022.
10
Machine learning and artificial intelligence in physiologically based pharmacokinetic modeling.机器学习和人工智能在基于生理学的药代动力学建模中的应用。
Toxicol Sci. 2023 Jan 31;191(1):1-14. doi: 10.1093/toxsci/kfac101.

本文引用的文献

1
Evaluation of Quantitative Structure Property Relationship Algorithms for Predicting Plasma Protein Binding in Humans.用于预测人体血浆蛋白结合的定量构效关系算法评估
Comput Toxicol. 2021 Feb 1;17:100142. doi: 10.1016/j.comtox.2020.100142.
2
Prediction of Oral Pharmacokinetics Using a Combination of In Silico Descriptors and In Vitro ADME Properties.利用体内外 ADME 特性与计算描述符组合预测口服药代动力学。
Mol Pharm. 2021 Mar 1;18(3):1071-1079. doi: 10.1021/acs.molpharmaceut.0c01009. Epub 2021 Jan 29.
3
Mechanistic insights on clearance and inhibition discordance between liver microsomes and hepatocytes when clearance in liver microsomes is higher than in hepatocytes.当肝微粒体中的清除率高于肝细胞中的清除率时,关于肝微粒体与肝细胞之间清除率和抑制作用不一致的机制性见解。
Eur J Pharm Sci. 2020 Dec 1;155:105541. doi: 10.1016/j.ejps.2020.105541. Epub 2020 Sep 12.
4
Assessing Toxicokinetic Uncertainty and Variability in Risk Prioritization.评估风险优先排序中的毒代动力学不确定性和变异性。
Toxicol Sci. 2019 Dec 1;172(2):235-251. doi: 10.1093/toxsci/kfz205.
5
High-throughput screening and chemotype-enrichment analysis of ToxCast phase II chemicals evaluated for human sodium-iodide symporter (NIS) inhibition.高通量筛选和 ToxCast 二期化学物质的化学型富集分析,评估其对人甲状腺钠碘转运体(NIS)的抑制作用。
Environ Int. 2019 May;126:377-386. doi: 10.1016/j.envint.2019.02.024. Epub 2019 Feb 28.
6
In silico approaches and tools for the prediction of drug metabolism and fate: A review.基于计算的方法和工具在药物代谢和命运预测中的应用:综述。
Comput Biol Med. 2019 Mar;106:54-64. doi: 10.1016/j.compbiomed.2019.01.008. Epub 2019 Jan 16.
7
QSAR Development for Plasma Protein Binding: Influence of the Ionization State.QSAR 开发用于血浆蛋白结合:电离状态的影响。
Pharm Res. 2018 Dec 27;36(2):28. doi: 10.1007/s11095-018-2561-8.
8
Consensus Modeling of Median Chemical Intake for the U.S. Population Based on Predictions of Exposure Pathways.基于暴露途径预测的美国人群中值化学摄入量的共识建模。
Environ Sci Technol. 2019 Jan 15;53(2):719-732. doi: 10.1021/acs.est.8b04056. Epub 2018 Dec 24.
9
Predicting Fraction Unbound in Human Plasma from Chemical Structure: Improved Accuracy in the Low Value Ranges.从化学结构预测人血浆中游离分数:在低值范围内提高准确性。
Mol Pharm. 2018 Nov 5;15(11):5302-5311. doi: 10.1021/acs.molpharmaceut.8b00785. Epub 2018 Sep 27.
10
httk: R Package for High-Throughput Toxicokinetics.httk:用于高通量毒物动力学的R软件包。
J Stat Softw. 2017 Jul 17;79(4):1-26. doi: 10.18637/jss.v079.i04.