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抗菌药物耐药性在作为具有人畜共患病潜力的耐药菌宿主的野生鸟类中悄然存在。

Antimicrobial Resistance Glides in the Sky-Free-Living Birds as a Reservoir of Resistant With Zoonotic Potential.

作者信息

Skarżyńska Magdalena, Zaja C Magdalena, Bomba Arkadiusz, Bocian Łukasz, Kozdruń Wojciech, Polak Marcin, Wia Cek Jarosław, Wasyl Dariusz

机构信息

Department of Microbiology, National Veterinary Research Institute, Puławy, Poland.

Department of Omics Analyses, National Veterinary Research Institute, Puławy, Poland.

出版信息

Front Microbiol. 2021 Apr 9;12:656223. doi: 10.3389/fmicb.2021.656223. eCollection 2021.

Abstract

Antimicrobial resistance (AMR) is one of the most important global health concerns; therefore, the identification of AMR reservoirs and vectors is essential. Attention should be paid to the recognition of potential hazards associated with wildlife as this field still seems to be incompletely explored. In this context, the role of free-living birds as AMR carriers is noteworthy. Therefore, we applied methods used in AMR monitoring, supplemented by colistin resistance screening, to investigate the AMR status of from free-living birds coming from natural habitats and rescue centers. Whole-genome sequencing (WGS) of strains enabled to determine resistance mechanisms and investigate their epidemiological relationships and virulence potential. As far as we know, this study is one of the few that applied WGS of that number ( = 71) of strains coming from a wild avian reservoir. The primary concerns arising from our study relate to resistance and its determinants toward antimicrobial classes of the highest priority for the treatment of critical infections in people, e.g., cephalosporins, quinolones, polymyxins, and aminoglycosides, as well as fosfomycin. Among the numerous determinants, , , , , , , , , , , and and chromosomal , , and mutations were identified. Fifty-two sequence types (STs) noted among 71 included the global lineages ST131, ST10, and ST224 as well as the three novel STs 11104, 11105, and 11194. Numerous virulence factors were noted with the prevailing , , , , , , and . Single was Shiga toxin-producing. Our study shows that the clonal spread of lineages of public and animal health relevance is a serious avian-associated hazard.

摘要

抗菌药物耐药性(AMR)是全球最重要的健康问题之一;因此,识别AMR储存库和传播媒介至关重要。应关注识别与野生动物相关的潜在危害,因为该领域似乎仍未得到充分探索。在这种背景下,自由生活鸟类作为AMR携带者的作用值得关注。因此,我们应用了AMR监测中使用的方法,并辅以黏菌素耐药性筛查,以调查来自自然栖息地和救援中心的自由生活鸟类的AMR状况。菌株的全基因组测序(WGS)能够确定耐药机制,并研究它们的流行病学关系和毒力潜力。据我们所知,本研究是少数对来自野生鸟类储存库的如此数量(n = 71)菌株应用WGS的研究之一。我们研究中出现的主要问题涉及对治疗人类严重感染最优先的抗菌药物类别的耐药性及其决定因素,例如头孢菌素、喹诺酮类、多粘菌素、氨基糖苷类以及磷霉素。在众多决定因素中,鉴定出了blaCTX-M、blaTEM、blaSHV、blaOXA、qnr、aac(6’)-Ib-cr、mcr-1、mcr-2、mcr-3、mcr-4、mcr-5以及染色体上的parC、gyrA和mgrB突变。在71株大肠杆菌中发现了52种序列类型(STs),包括全球谱系ST131、ST10和ST224以及三种新的STs 11104、11105和11194。注意到许多毒力因子,其中以 fimH、papC、sfa/foc、ibeA、iutA、kpsMTII和fyuA为主。单个菌株产志贺毒素。我们的研究表明,具有公共卫生和动物健康相关性的大肠杆菌谱系的克隆传播是一种严重的与鸟类相关的危害。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a6e/8062882/67d373610b11/fmicb-12-656223-g001.jpg

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