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基于光镊力跳实验研究 DNA 折纸纳米弹簧的机械化学性质

Mechanochemical properties of DNA origami nanosprings revealed by force jumps in optical tweezers.

机构信息

Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA.

出版信息

Nanoscale. 2021 May 14;13(18):8425-8430. doi: 10.1039/d0nr08605c. Epub 2021 Apr 28.

Abstract

By incorporating pH responsive i-motif elements, we have constructed DNA origami nanosprings that respond to pH changes in the environment. Using an innovative force jump approach in optical tweezers, we have directly measured the spring constants and dynamic recoiling responses of the DNA nanosprings under different forces. These DNA nanosprings exhibited 3 times slower recoiling rates compared to duplex DNA backbones. In addition, we observed two distinct force regions which show different spring constants. In the entropic region below 2 pN, a spring constant of ∼0.03 pN nm was obtained, whereas in the enthalpic region above 2 pN, the nanospring was 17 times stronger (0.5 pN nm). The force jump gave a more accurate measurement on nanospring constants compared to regular force ramping approaches, which only yielded an average spring constant in a specific force range. Compared to the reported DNA origami nanosprings with a completely different design, our nanospring is up to 50 times stiffer. The drastic increase in the spring constant and the pH responsive feature allow more robust applications of these nanosprings in many mechanobiological processes.

摘要

通过引入对 pH 值敏感的 i-motif 元件,我们构建了对环境 pH 值变化有响应的 DNA 折纸纳米弹簧。我们使用光镊中的创新力跃 approach,直接测量了在不同力下 DNA 纳米弹簧的弹簧常数和动态回弹响应。与双链 DNA 骨架相比,这些 DNA 纳米弹簧的回弹速度慢了 3 倍。此外,我们观察到了两个不同的力区,它们显示出不同的弹簧常数。在低于 2 pN 的熵区,得到了约 0.03 pNnm 的弹簧常数,而在高于 2 pN 的焓区,纳米弹簧的强度增加了 17 倍(0.5 pNnm)。与仅在特定力范围内产生平均弹簧常数的常规力斜坡 approach 相比,力跃 approach 对纳米弹簧常数的测量更准确。与具有完全不同设计的已报道的 DNA 折纸纳米弹簧相比,我们的纳米弹簧硬了 50 倍以上。弹簧常数的急剧增加和对 pH 值的响应特性允许这些纳米弹簧在许多机械生物学过程中得到更稳健的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b171/8170849/4ac587bd1ee2/nihms-1698711-f0001.jpg

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