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使用环境DNA代谢条形码技术检测拉特瑞蠓(双翅目:蠓科)有效方案的验证

Validation of an Effective Protocol for Latreille (Diptera: Ceratopogonidae) Detection Using eDNA Metabarcoding.

作者信息

Milián-García Yoamel, Janke Lauren A A, Young Robert G, Ambagala Aruna, Hanner Robert H

机构信息

Department of Integrative Biology, University of Guelph, 50 Stone Rd E, Guelph, ON N1G 2W1, Canada.

Canadian Food Inspection Agency/Government of Canada, Winnipeg, MB R3E 3M4, Canada.

出版信息

Insects. 2021 Apr 30;12(5):401. doi: 10.3390/insects12050401.

Abstract

eDNA metabarcoding is an effective molecular-based identification method for the biosurveillance of flighted insects. An eDNA surveillance approach maintains specimens for secondary morphological identification useful for regulatory applications. This study identified species using eDNA metabarcoding and compared these results to morphological identifications of trapped specimens. Insects were collected using ultraviolet (UV) lighted fan traps containing a saturated salt (NaCl) solution from two locations in Guelph, Ontario, Canada. There were forty-two specimens collected in total. Molecular identification detected four species, , , and Using morphological identification, two out of these four taxonomic ranks were confirmed at the species level ( and ) and one was confirmed at the subgenus level ( []). No molecular detection of species occurred in traps with an abundance of less than three individuals per taxon. The inconsistency in identifying specimens to the species level punctuates the need for curated DNA reference libraries for . In conclusion, the saturated salt (NaCl) solution preserved the morphological characteristics and the eDNA.

摘要

环境DNA宏条形码技术是一种用于飞行昆虫生物监测的基于分子的有效鉴定方法。一种环境DNA监测方法保留标本以便进行二次形态学鉴定,这对监管应用很有用。本研究使用环境DNA宏条形码技术鉴定物种,并将这些结果与诱捕标本的形态学鉴定结果进行比较。在加拿大安大略省圭尔夫市的两个地点,使用装有饱和盐(氯化钠)溶液的紫外线诱虫风扇陷阱收集昆虫。总共收集了42个标本。分子鉴定检测到4个物种,即[具体物种名称1]、[具体物种名称2]、[具体物种名称3]和[具体物种名称4]。使用形态学鉴定,这四个分类等级中的两个在物种水平得到确认([具体物种名称1]和[具体物种名称2]),一个在亚属水平得到确认([具体亚属名称][具体物种名称3])。在每个分类单元中个体数量少于三个的陷阱中未检测到[具体物种名称4]的分子信号。在将[具体物种名称4]标本鉴定到物种水平上的不一致突出了建立[具体物种名称4]的高质量DNA参考文库的必要性。总之,饱和盐(氯化钠)溶液保存了[具体物种名称4]的形态特征和环境DNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f60b/8146839/ed3095d6c799/insects-12-00401-g001.jpg

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