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通过生物信息学分析探索肺腺癌的预后生物标志物

Exploration of Prognostic Biomarkers for Lung Adenocarcinoma Through Bioinformatics Analysis.

作者信息

Tu Zhengliang, He Xiangfeng, Zeng Liping, Meng Di, Zhuang Runzhou, Zhao Jiangang, Dai Wanrong

机构信息

Department of Thoracic Surgery, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.

Department of Thoracic Surgery, Zhuji People's Hospital, Zhuji, China.

出版信息

Front Genet. 2021 Apr 22;12:647521. doi: 10.3389/fgene.2021.647521. eCollection 2021.

Abstract

With the development of computer technology, screening cancer biomarkers based on public databases has become a common research method. Here, an eight-gene prognostic model, which could be used to judge the prognosis of patients with lung adenocarcinoma (LUAD), was developed through bioinformatics methods. This study firstly used several gene datasets from GEO database to mine differentially expressed genes (DEGs) in LUAD tissue and healthy tissue via joint analysis. Later, enrichment analysis for the DEGs was performed, and it was found that the DEGs were mainly activated in pathways involved in extracellular matrix, cell adhesion, and leukocyte migration. Afterward, a TCGA cohort was used to perform univariate Cox, least absolute shrinkage and selection operator method, and multivariate Cox regression analyses for the DEGs, and a prognostic model consisting of eight genes (GPX3, TCN1, ASPM, PCP4, CAV2, S100P, COL1A1, and SPOK2) was established. Receiver operation characteristic (ROC) curve was then used to substantiate the diagnostic efficacy of the prognostic model. The survival significance of signature genes was verified through the GEPIA database, and the results exhibited that the risk coefficients of the eight genes were basically congruous with the effects of these genes on the prognosis in the GEPIA database, which suggested that the results were accurate. Finally, combined with clinical characteristics of patients, the diagnostic independence of the prognostic model was further validated through univariate and multivariate regression, and the results indicated that the model had independent prognostic value. The overall finding of the study manifested that the eight-gene prognostic model is closely related to the prognosis of LUAD patients, and can be used as an independent prognostic indicator. Additionally, the prognostic model in this study can help doctors make a better diagnosis in treatment and ultimately benefit LUAD patients.

摘要

随着计算机技术的发展,基于公共数据库筛选癌症生物标志物已成为一种常见的研究方法。在此,通过生物信息学方法开发了一种可用于判断肺腺癌(LUAD)患者预后的八基因预后模型。本研究首先使用来自GEO数据库的几个基因数据集,通过联合分析挖掘LUAD组织和健康组织中的差异表达基因(DEG)。随后,对DEG进行富集分析,发现DEG主要在参与细胞外基质、细胞粘附和白细胞迁移的途径中被激活。之后,使用TCGA队列对DEG进行单变量Cox、最小绝对收缩和选择算子方法以及多变量Cox回归分析,并建立了一个由八个基因(GPX3、TCN1、ASPM、PCP4、CAV2、S100P、COL1A1和SPOK2)组成的预后模型。然后使用受试者工作特征(ROC)曲线来证实预后模型的诊断效能。通过GEPIA数据库验证了特征基因的生存意义,结果表明这八个基因的风险系数与这些基因在GEPIA数据库中对预后的影响基本一致,这表明结果是准确的。最后,结合患者的临床特征,通过单变量和多变量回归进一步验证了预后模型的诊断独立性,结果表明该模型具有独立的预后价值。该研究的总体结果表明,八基因预后模型与LUAD患者的预后密切相关,可作为独立的预后指标。此外,本研究中的预后模型可以帮助医生在治疗中做出更好的诊断,并最终使LUAD患者受益。

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