泰国家禽养殖场、屠宰场和零售摊位沙门氏菌分离株的全基因组测序分析
Whole-Genome Sequencing Analysis of Salmonella Isolates from Poultry Farms, a Slaughterhouse, and Retail Stalls in Thailand.
作者信息
Ong Kar Hui, Aung Kyaw Thu, Chan Sharon C M, Chen Swaine L, Ng Lee Ching, Vongkamjan Kitiya
机构信息
National Centre for Food Science, Singapore Food Agency, Singapore.
Environmental Health Institute, National Environment Agency, Singapore.
出版信息
Microbiol Resour Announc. 2021 May 13;10(19):e01063-20. doi: 10.1128/MRA.01063-20.
Abstract
The draft genome sequences of 21 isolates obtained from poultry production chains in Hat Yai City, Songkhla Province, Thailand, are reported in this study. Our study revealed that there was environmental contamination along poultry production chains and cross-contamination among poultry through inanimate surfaces in the environment.
摘要
本研究报告了从泰国宋卡府合艾市家禽生产链中分离出的21株菌株的基因组序列草图。我们的研究表明，家禽生产链存在环境污染，并且家禽之间通过环境中的无生命表面发生了交叉污染。
相似文献
1
Whole-Genome Sequencing Analysis of Salmonella Isolates from Poultry Farms, a Slaughterhouse, and Retail Stalls in Thailand.
Microbiol Resour Announc. 2021 May 13;10(19):e01063-20. doi: 10.1128/MRA.01063-20.
2
Rural Health Care Workers and Local Residents Health Status in Yulong County of Yunnan Province China and Hat Yai City of Songkhla Mansion Thailand.
JNMA J Nepal Med Assoc. 2017 Jan-Mar;56(205):168-174.
3
Occurrence, genotypes and antimicrobial susceptibility of Salmonella collected from the broiler production chain within an integrated poultry company.
Int J Food Microbiol. 2019 Jun 16;299:1-7. doi: 10.1016/j.ijfoodmicro.2019.03.014. Epub 2019 Mar 24.
4
[Molecular typing of isolates from poultry production chains in four cities of Heilongjiang province].
Zhonghua Liu Xing Bing Xue Za Zhi. 2016 Dec 10;37(12):1630-1638. doi: 10.3760/cma.j.issn.0254-6450.2016.12.015.
5
Genome sequence analysis of 91 Salmonella Enteritidis isolates from mice caught on poultry farms in the mid 1990s.
Genomics. 2020 Jan;112(1):528-544. doi: 10.1016/j.ygeno.2019.04.005. Epub 2019 Apr 8.
6
A Whole-Genome Sequencing Approach To Study Cefoxitin-Resistant Salmonella enterica Serovar Heidelberg Isolates from Various Sources.
Antimicrob Agents Chemother. 2017 Mar 24;61(4). doi: 10.1128/AAC.01919-16. Print 2017 Apr.
7
Characterization of Flagellotropic, Chi-Like Phages Isolated from Thai Poultry Farms.
Viruses. 2019 Jun 5;11(6):520. doi: 10.3390/v11060520.
8
Draft genome sequences of two ciprofloxacin-resistant Salmonella enterica subsp. enterica serotype Kentucky ST198 isolated from retail chicken carcasses in Egypt.
J Glob Antimicrob Resist. 2018 Sep;14:101-103. doi: 10.1016/j.jgar.2018.06.012. Epub 2018 Jun 30.
9
A cross-sectional study of Salmonella in pork products in Chiang Mai, Thailand.
Foodborne Pathog Dis. 2010 Aug;7(8):873-8. doi: 10.1089/fpd.2009.0436.
10
Phenotypic characteristics and genotypic correlation between Salmonella isolates from a slaughterhouse and retail markets in Yangzhou, China.
Int J Food Microbiol. 2016 Apr 2;222:56-64. doi: 10.1016/j.ijfoodmicro.2016.01.020. Epub 2016 Jan 29.
引用本文的文献
1
Genomic analysis of isolated from canal water in Bangkok, Thailand.
Microbiol Spectr. 2024 May 2;12(5):e0421623. doi: 10.1128/spectrum.04216-23. Epub 2024 Apr 2.
本文引用的文献
1
Characterizing Antimicrobial Use in the Livestock Sector in Three South East Asian Countries (Indonesia, Thailand, and Vietnam).
Antibiotics (Basel). 2019 Mar 25;8(1):33. doi: 10.3390/antibiotics8010033.
2
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees.
Genome Biol. 2016 May 11;17:102. doi: 10.1186/s13059-016-0951-y.
4
Salmonella serotype determination utilizing high-throughput genome sequencing data.
J Clin Microbiol. 2015 May;53(5):1685-92. doi: 10.1128/JCM.00323-15. Epub 2015 Mar 11.
5
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.
Genome Med. 2014 Nov 20;6(11):90. doi: 10.1186/s13073-014-0090-6. eCollection 2014.
6
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
7
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
8
ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes.
Antimicrob Agents Chemother. 2014;58(1):212-20. doi: 10.1128/AAC.01310-13. Epub 2013 Oct 21.
9
BIGSdb: Scalable analysis of bacterial genome variation at the population level.
BMC Bioinformatics. 2010 Dec 10;11:595. doi: 10.1186/1471-2105-11-595.
10
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
Zotero 插件