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从沿海水中分离的携带 NDM-1 编码质粒的醋酸钙不动杆菌。

NDM-1-encoding plasmid in Acinetobacter chengduensis isolated from coastal water.

机构信息

Laboratório de Investigação em Microbiologia Médica (LIMM), Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.

Departamento de Microbiologia, Instituto Aggeu Magalhães-FIOCRUZ, Recife, PE, Brazil.

出版信息

Infect Genet Evol. 2021 Sep;93:104926. doi: 10.1016/j.meegid.2021.104926. Epub 2021 May 18.

Abstract

BACKGROUND

Acinetobacter spp. may cause difficult-to-treat nosocomial infections due to acquisition of carbapenemases, including New Delhi metallo-β-lactamase (NDM). This genus has been pointed out as a possible actor in the early dissemination of bla, and this gene has been documented in a variety of species.

OBJECTIVE

Here we describe an Acinetobacter chengduensis (isolate FL51) carrying bla recovered from coastal water in Brazil.

METHODS

In vitro techniques included antimicrobial susceptibility and minimum inhibitory concentration tests, PCR, plasmid profile and matting-out/transformation assays. In silico approaches comprised comparative genomic analyses using appropriate databases.

RESULTS

FL51 grew at room temperature in a variety of culture media, excluding MacConkey. It showed resistance to all beta-lactams tested and to ciprofloxacin. bla was identified, and a single replicon was observed in plasmid profile. In silico DNA hybridization revealed Acinetobacter FL51 as being Acinetobacter chengduensis. bla was flanked upstream by ISAba14-aphA6-ISAba125 and downstream by ble-trpF-Δtat, inserted in a 41,068 bp non typeable plasmid named pNDM-FL51. This replicon showed high coverage and identity with other sequences present in plasmids deposited on the GenBank database, recovered almost exclusively from Acinetobacter spp., associated with hospital settings and animal sources.

CONCLUSION

We described a recently described environmental Acinetobacter species carrying a plasmid-borne bla associated with a Tn125-like structure. Our findings suggest that replicon may play an important role in bla dissemination among distinct settings within this genus and may support the theory of bla emergence from an environmental Acinetobacter.

摘要

背景

不动杆菌属由于获得碳青霉烯酶,包括新德里金属β-内酰胺酶(NDM),可能导致难以治疗的医院获得性感染。该属已被指出是 bla 早期传播的可能因素,并且该基因已在多种物种中记录。

目的

本研究描述了从巴西沿海水中回收的携带 bla 的弗氏柠檬酸杆菌(FL51 分离株)。

方法

体外技术包括药敏试验和最小抑菌浓度试验、PCR、质粒图谱和配对/转化试验。计算方法包括使用适当数据库进行比较基因组分析。

结果

FL51 在各种培养基中于室温生长,不包括 MacConkey。它对所有测试的β-内酰胺类药物和环丙沙星均表现出耐药性。鉴定出 bla,并在质粒图谱中观察到单个复制子。计算 DNA 杂交显示 Acinetobacter FL51 为弗氏柠檬酸杆菌。bla 上游由 ISAba14-aphA6-ISAba125 和下游由 ble-trpF-Δtat 侧翼,插入在一个名为 pNDM-FL51 的 41,068 bp 非可分型质粒中。该复制子与 GenBank 数据库中储存的质粒序列具有高度覆盖度和同一性,几乎仅从不动杆菌属中回收,与医院环境和动物来源相关。

结论

我们描述了一种最近描述的环境不动杆菌属,携带与 Tn125 样结构相关的质粒携带 bla。我们的研究结果表明,复制子可能在该属不同环境中 bla 的传播中发挥重要作用,并支持 bla 从环境不动杆菌中出现的理论。

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