• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单细胞转录组分析揭示bHLH因子对人视网膜类器官发育的影响。

Single Cell Transcriptomic Analyses Reveal the Impact of bHLH Factors on Human Retinal Organoid Development.

作者信息

Zhang Xiangmei, Mandric Igor, Nguyen Kevin H, Nguyen Thao T T, Pellegrini Matteo, Grove James C R, Barnes Steven, Yang Xian-Jie

机构信息

Department of Ophthalmology, Stein Eye Institute, University of California, Los Angeles, Los Angeles, CA, United States.

Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, United States.

出版信息

Front Cell Dev Biol. 2021 May 13;9:653305. doi: 10.3389/fcell.2021.653305. eCollection 2021.

DOI:10.3389/fcell.2021.653305
PMID:34055784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8155690/
Abstract

The developing retina expresses multiple bHLH transcription factors. Their precise functions and interactions in uncommitted retinal progenitors remain to be fully elucidated. Here, we investigate the roles of bHLH factors ATOH7 and Neurog2 in human ES cell-derived retinal organoids. Single cell transcriptome analyses identify three states of proliferating retinal progenitors: pre-neurogenic, neurogenic, and cell cycle-exiting progenitors. Each shows different expression profile of bHLH factors. The cell cycle-exiting progenitors feed into a postmitotic heterozygous neuroblast pool that gives rise to early born neuronal lineages. Elevating or expression accelerates the transition from the pre-neurogenic to the neurogenic state, and expands the exiting progenitor and neuroblast populations. In addition, ATOH7 and Neurog2 significantly, yet differentially, enhance retinal ganglion cell and cone photoreceptor production. Moreover, single cell transcriptome analyses reveal that ATOH7 and Neurog2 each assert positive autoregulation, and both suppress key bHLH factors associated with the pre-neurogenic and states and elevate bHLH factors expressed by exiting progenitors and differentiating neuroblasts. This study thus provides novel insight regarding how ATOH7 and Neurog2 impact human retinal progenitor behaviors and neuroblast fate choices.

摘要

发育中的视网膜表达多种bHLH转录因子。它们在未分化的视网膜祖细胞中的精确功能和相互作用仍有待充分阐明。在这里,我们研究了bHLH因子ATOH7和Neurog2在人胚胎干细胞来源的视网膜类器官中的作用。单细胞转录组分析确定了增殖性视网膜祖细胞的三种状态:神经源性前、神经源性和退出细胞周期的祖细胞。每种状态都显示出不同的bHLH因子表达谱。退出细胞周期的祖细胞进入一个有丝分裂后的杂合神经母细胞池,该池产生早期出生的神经元谱系。升高或表达可加速从神经源性前状态到神经源性状态的转变,并扩大退出的祖细胞和神经母细胞群体。此外,ATOH7和Neurog2显著但有差异地增强视网膜神经节细胞和视锥光感受器的产生。此外,单细胞转录组分析表明,ATOH7和Neurog2各自具有正向自调节作用,并且都抑制与神经源性前状态和状态相关的关键bHLH因子,并提高退出的祖细胞和分化中的神经母细胞表达的bHLH因子。因此,本研究为ATOH7和Neurog2如何影响人类视网膜祖细胞行为和神经母细胞命运选择提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/9b25189b4b3e/fcell-09-653305-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/82d8e2231bb7/fcell-09-653305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/f01a51135b3a/fcell-09-653305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/8eeb1034fd84/fcell-09-653305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/b6e58e1bdb06/fcell-09-653305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/fd99a23165ea/fcell-09-653305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/16c5122d5c7e/fcell-09-653305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/8b65a5f9d9ec/fcell-09-653305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/1dcf0cd4ae27/fcell-09-653305-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/9b25189b4b3e/fcell-09-653305-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/82d8e2231bb7/fcell-09-653305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/f01a51135b3a/fcell-09-653305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/8eeb1034fd84/fcell-09-653305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/b6e58e1bdb06/fcell-09-653305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/fd99a23165ea/fcell-09-653305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/16c5122d5c7e/fcell-09-653305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/8b65a5f9d9ec/fcell-09-653305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/1dcf0cd4ae27/fcell-09-653305-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1952/8155690/9b25189b4b3e/fcell-09-653305-g009.jpg

相似文献

1
Single Cell Transcriptomic Analyses Reveal the Impact of bHLH Factors on Human Retinal Organoid Development.单细胞转录组分析揭示bHLH因子对人视网膜类器官发育的影响。
Front Cell Dev Biol. 2021 May 13;9:653305. doi: 10.3389/fcell.2021.653305. eCollection 2021.
2
Elevated expression of human bHLH factor ATOH7 accelerates cell cycle progression of progenitors and enhances production of avian retinal ganglion cells.人 bHLH 因子 ATOH7 的高表达加速了前体细胞的细胞周期进程,并增强了禽类视网膜神经节细胞的产生。
Sci Rep. 2018 May 1;8(1):6823. doi: 10.1038/s41598-018-25188-z.
3
Integral bHLH factor regulation of cell cycle exit and RGC differentiation.细胞周期退出和视网膜神经节细胞分化的整合bHLH因子调控
Dev Dyn. 2018 Aug;247(8):965-975. doi: 10.1002/dvdy.24638. Epub 2018 Jun 26.
4
Notch signaling differentially regulates Atoh7 and Neurog2 in the distal mouse retina.Notch 信号通路在远端小鼠视网膜中差异调节 Atoh7 和 Neurog2 的表达。
Development. 2014 Aug;141(16):3243-54. doi: 10.1242/dev.106245.
5
Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors.神经源性细胞周期中动态的Pax6表达影响视网膜祖细胞的增殖和细胞命运选择。
Neural Dev. 2009 Aug 17;4:32. doi: 10.1186/1749-8104-4-32.
6
Transcriptome of Atoh7 retinal progenitor cells identifies new Atoh7-dependent regulatory genes for retinal ganglion cell formation.Atoh7视网膜祖细胞的转录组鉴定出视网膜神经节细胞形成中依赖Atoh7的新调控基因。
Dev Neurobiol. 2014 Nov;74(11):1123-40. doi: 10.1002/dneu.22188. Epub 2014 May 22.
7
Identification and Characterization of ATOH7-Regulated Target Genes and Pathways in Human Neuroretinal Development.人神经视网膜发育中 ATOH7 调控靶基因和通路的鉴定与特征分析。
Cells. 2024 Jul 3;13(13):1142. doi: 10.3390/cells13131142.
8
Reprogramming amacrine and photoreceptor progenitors into retinal ganglion cells by replacing Neurod1 with Atoh7.通过用 Atoh7 替代 Neurod1 将无长突细胞和光感受器祖细胞重编程为视网膜神经节细胞。
Development. 2013 Feb 1;140(3):541-51. doi: 10.1242/dev.085886.
9
Differentiation of retinal ganglion cells and photoreceptor precursors from mouse induced pluripotent stem cells carrying an Atoh7/Math5 lineage reporter.从小鼠诱导多能干细胞中分化出携带Atoh7/Math5谱系报告基因的视网膜神经节细胞和光感受器前体细胞。
PLoS One. 2014 Nov 17;9(11):e112175. doi: 10.1371/journal.pone.0112175. eCollection 2014.
10
Neurog2 controls the leading edge of neurogenesis in the mammalian retina.Neurog2 控制着哺乳动物视网膜神经发生的前沿。
Dev Biol. 2010 Apr 15;340(2):490-503. doi: 10.1016/j.ydbio.2010.02.002. Epub 2010 Feb 6.

引用本文的文献

1
C. elegans PPEF-type phosphatase (Retinal degeneration C ortholog) functions in diverse classes of cilia to regulate nematode behaviors.秀丽隐杆线虫 PPEF 型磷酸酶(视网膜退行性变 C 同源物)在多种纤毛类群中发挥作用,以调节线虫行为。
Sci Rep. 2024 Nov 16;14(1):28347. doi: 10.1038/s41598-024-79057-z.
2
MLL1 inhibits the neurogenic potential of SCAPs by interacting with WDR5 and repressing HES1.MLL1 通过与 WDR5 相互作用并抑制 HES1 来抑制 SCAPs 的神经发生潜能。
Int J Oral Sci. 2023 Oct 18;15(1):48. doi: 10.1038/s41368-023-00253-0.
3
Human retinal ganglion cell neurons generated by synchronous BMP inhibition and transcription factor mediated reprogramming.

本文引用的文献

1
Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinas.单细胞转录组学揭示了野生型和 Atoh7 缺失型视网膜中神经节细胞的谱系轨迹。
Nat Commun. 2021 Mar 5;12(1):1465. doi: 10.1038/s41467-021-21704-4.
2
Quick Commitment and Efficient Reprogramming Route of Direct Induction of Retinal Ganglion Cell-like Neurons.快速启动和高效重编程途径直接诱导视网膜神经节细胞样神经元。
Stem Cell Reports. 2020 Nov 10;15(5):1095-1110. doi: 10.1016/j.stemcr.2020.09.008. Epub 2020 Oct 22.
3
Gene regulatory networks controlling vertebrate retinal regeneration.
通过同步抑制骨形态发生蛋白(BMP)和转录因子介导的重编程产生的人类视网膜神经节细胞神经元。
NPJ Regen Med. 2023 Sep 29;8(1):55. doi: 10.1038/s41536-023-00327-x.
4
Establishing induced pluripotent stem cell lines from two dominant optic atrophy patients with distinct mutations and clinical pathologies.从两名具有不同突变和临床病理特征的显性遗传性视神经萎缩患者中建立诱导多能干细胞系。
Front Genet. 2023 Sep 4;14:1251216. doi: 10.3389/fgene.2023.1251216. eCollection 2023.
5
Selective deletion of zinc transporter 3 in amacrine cells promotes retinal ganglion cell survival and optic nerve regeneration after injury.无长突细胞中锌转运体3的选择性缺失可促进视网膜神经节细胞存活及损伤后视神经再生。
Neural Regen Res. 2023 Dec;18(12):2773-2780. doi: 10.4103/1673-5374.373660.
6
Gene expression in organoids: an expanding horizon.类器官中的基因表达:不断扩展的视野。
Biol Direct. 2023 Mar 25;18(1):11. doi: 10.1186/s13062-023-00360-2.
7
Key transcription factors influence the epigenetic landscape to regulate retinal cell differentiation.关键转录因子影响表观遗传景观,以调节视网膜细胞分化。
Nucleic Acids Res. 2023 Mar 21;51(5):2151-2176. doi: 10.1093/nar/gkad026.
控制脊椎动物视网膜再生的基因调控网络。
Science. 2020 Nov 20;370(6519). doi: 10.1126/science.abb8598. Epub 2020 Oct 1.
4
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.人类视网膜及其类器官的细胞类型解析
Cell. 2020 Sep 17;182(6):1623-1640.e34. doi: 10.1016/j.cell.2020.08.013.
5
The remote enhancer provides transcriptional robustness during retinal ganglion cell development.远程增强子在视网膜神经节细胞发育过程中提供转录稳健性。
Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21690-21700. doi: 10.1073/pnas.2006888117. Epub 2020 Aug 17.
6
Cell Atlas of The Human Fovea and Peripheral Retina.人眼黄斑和周边视网膜细胞图谱。
Sci Rep. 2020 Jun 17;10(1):9802. doi: 10.1038/s41598-020-66092-9.
7
Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.单细胞分析人类视网膜鉴定出控制发育的进化保守和物种特异性机制。
Dev Cell. 2020 May 18;53(4):473-491.e9. doi: 10.1016/j.devcel.2020.04.009. Epub 2020 May 7.
8
Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.单细胞转录组比较人类胎儿视网膜、人胚胎干细胞衍生的视网膜类器官和长期视网膜培养物。
Cell Rep. 2020 Feb 4;30(5):1644-1659.e4. doi: 10.1016/j.celrep.2020.01.007.
9
Functional and Evolutionary Diversification of Otx2 and Crx in Vertebrate Retinal Photoreceptor and Bipolar Cell Development.脊椎动物视网膜感光细胞和双极细胞发育中 Otx2 和 Crx 的功能和进化多样化。
Cell Rep. 2020 Jan 21;30(3):658-671.e5. doi: 10.1016/j.celrep.2019.12.072.
10
ShinyGO: a graphical gene-set enrichment tool for animals and plants.ShinyGO:一个用于动植物的图形基因集富集工具。
Bioinformatics. 2020 Apr 15;36(8):2628-2629. doi: 10.1093/bioinformatics/btz931.