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一种用于识别与新冠病毒相关心脏重塑中潜在分子机制和关键基因的生物信息学方法。

A bioinformatics approach for identifying potential molecular mechanisms and key genes involved in COVID-19 associated cardiac remodeling.

作者信息

Ceylan Hamid

机构信息

Department of Molecular Biology and Genetics, Faculty of Science, Atatürk University, Erzurum, Turkey.

出版信息

Gene Rep. 2021 Sep;24:101246. doi: 10.1016/j.genrep.2021.101246. Epub 2021 Jun 11.

Abstract

In 2019 coronavirus disease (COVID-19), whose main complication is respiratory involvement, different organs may also be affected in severe cases. However, COVID-19 associated cardiovascular manifestations are limited at present. The main purpose of this study was to identify potential candidate genes involved in COVID-19-associated heart damage by bioinformatics analysis. Differently expressed genes (DEGs) were identified using transcriptome profiles (GSE150392 and GSE4172) downloaded from the GEO database. After gene and pathway enrichment analyses, PPI network visualization, module analyses, and hub gene extraction were performed using Cytoscape software. A total of 228 (136 up and 92 downregulated) overlapping DEGs were identified at these two microarray datasets. Finally, the top hub genes (, , , and ) were screened out as the critical genes among the DEGs from the PPI network. Identification of critical genes and mechanisms in any disease can lead us to better diagnosis and targeted therapy. Our findings identified core genes shared by inflammatory cardiomyopathy and SARS-CoV-2. The findings of the current study support the idea that these key genes can be used in understanding and managing the long-term cardiovascular effects of COVID-19.

摘要

在2019冠状病毒病(COVID-19)中,其主要并发症是呼吸系统受累,在严重病例中不同器官也可能受到影响。然而,目前与COVID-19相关的心血管表现有限。本研究的主要目的是通过生物信息学分析确定与COVID-19相关心脏损伤有关的潜在候选基因。利用从基因表达综合数据库(GEO数据库)下载的转录组图谱(GSE150392和GSE4172)鉴定差异表达基因(DEG)。在进行基因和通路富集分析后,使用Cytoscape软件进行蛋白质-蛋白质相互作用(PPI)网络可视化、模块分析和枢纽基因提取。在这两个微阵列数据集中共鉴定出228个重叠的差异表达基因(136个上调和92个下调)。最后,从PPI网络的差异表达基因中筛选出前几个枢纽基因(、、和)作为关键基因。鉴定任何疾病中的关键基因和机制都能使我们更好地进行诊断和靶向治疗。我们的研究结果确定了炎症性心肌病和严重急性呼吸综合征冠状病毒2(SARS-CoV-2)共有的核心基因。本研究结果支持以下观点:这些关键基因可用于理解和管理COVID-19的长期心血管影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c199/8192842/52520c1af715/gr1_lrg.jpg

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