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《沙滩上的足迹:脊椎动物基因组学中的深度分类学比较以揭示人类长寿的遗传程序》

Footprints in the Sand: Deep Taxonomic Comparisons in Vertebrate Genomics to Unveil the Genetic Programs of Human Longevity.

作者信息

Treaster Stephen, Karasik David, Harris Matthew P

机构信息

Department of Orthopaedics, Boston Children's Hospital, Boston, MA, United States.

Department of Genetics, Harvard Medical School, Boston, MA, United States.

出版信息

Front Genet. 2021 Jun 7;12:678073. doi: 10.3389/fgene.2021.678073. eCollection 2021.

Abstract

With the modern quality, quantity, and availability of genomic sequencing across species, as well as across the expanse of human populations, we can screen for shared signatures underlying longevity and lifespan. Knowledge of these mechanisms would be medically invaluable in combating aging and age-related diseases. The diversity of longevities across vertebrates is an opportunity to look for patterns of genetic variation that may signal how this life history property is regulated, and ultimately how it can be modulated. Variation in human longevity provides a unique window to look for cases of extreme lifespan within a population, as well as associations across populations for factors that influence capacity to live longer. Current large cohort studies support the use of population level analyses to identify key factors associating with human lifespan. These studies are powerful in concept, but have demonstrated limited ability to resolve signals from background variation. In parallel, the expanding catalog of sequencing and annotation from diverse species, some of which have evolved longevities well past a human lifespan, provides independent cases to look at the genomic signatures of longevity. Recent comparative genomic work has shown promise in finding shared mechanisms associating with longevity among distantly related vertebrate groups. Given the genetic constraints between vertebrates, we posit that a combination of approaches, of parallel meta-analysis of human longevity along with refined analysis of other vertebrate clades having exceptional longevity, will aid in resolving key regulators of enhanced lifespan that have proven to be elusive when analyzed in isolation.

摘要

随着跨物种以及整个人类群体基因组测序在现代的质量、数量和可及性,我们能够筛选出长寿和寿命背后的共同特征。了解这些机制在对抗衰老和与年龄相关的疾病方面将具有巨大的医学价值。脊椎动物寿命的多样性为寻找遗传变异模式提供了机会,这些模式可能揭示这种生命史特性是如何被调节的,以及最终如何被调控。人类寿命的差异为在人群中寻找极端寿命案例以及跨人群寻找影响长寿能力的因素之间的关联提供了一个独特的窗口。当前的大型队列研究支持使用人群水平分析来识别与人类寿命相关的关键因素。这些研究在概念上很强大,但在从背景变异中分辨信号方面能力有限。与此同时,来自不同物种的不断扩大的测序和注释目录,其中一些物种的寿命远远超过人类寿命,提供了独立的案例来研究长寿的基因组特征。最近的比较基因组研究在寻找远缘脊椎动物群体中与长寿相关的共同机制方面显示出前景。考虑到脊椎动物之间的遗传限制,我们认为,将人类寿命的平行荟萃分析与对具有超长寿命的其他脊椎动物类群的精细分析相结合的方法,将有助于解析那些单独分析时难以捉摸的延长寿命的关键调节因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d433/8215702/619da27fb70b/fgene-12-678073-g001.jpg

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