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来自淡水洛克塔克湖分离菌株LS14的基因组序列草图及一种生物表面活性剂的潜在鉴定

Draft genome sequence and potential identification of a biosurfactant from strain LS14 an isolate from fresh water Loktak Lake.

作者信息

Kumari Khushbu, Gouda Sudhanshu K, Panda Ananta N, Ray Lopamudra, Sahoo Dinabandhu, Nayak Tanmaya, Gupta Vipin, Raina Vishakha

机构信息

Environmental Biotechnology Laboratory, School of Biotechnology, Kalinga Institute of Industrial Technology-KIIT (Deemed to be University), Bhubaneswar, Odisha 751024 India.

Present Address: School of Law, Kalinga Institute of Industrial Technology-KIIT (Deemed to be University), Bhubaneswar, Odisha 751024 India.

出版信息

3 Biotech. 2021 Jul;11(7):326. doi: 10.1007/s13205-021-02867-9. Epub 2021 Jun 11.

Abstract

UNLABELLED

This study reports the whole-genome sequencing and sequence analysis of a bacterial isolate strain LS14, isolated from Loktak Lake, Imphal, India. The de novo assembled genome reported in this paper featured a size of 3,809,532 bp, has GC content of 68% and contains 3602 genomic features, including 3551 protein-coding genes, 46 tRNA and 5rRNA. A biosurfactant biosynthesis gene cluster in the genome of the isolated strain was identified using AntiSMASH online tool V3.0.5 and KAAS (KEGG Automatic Annotation Server). The presence of biosurfactant was demonstrated by drop collapse, oil displacement and emulsification index. Subsequent chemical characterization using FTIR and LC-MS analyses revealed surfactin and terpene containing biosurfactant moieties. Also, the presence of genes involved in terpenoid synthesis pathway in the genome sequence may account for biosurfactant terpenoid backbone, but genes for later-stage conversion of terpenoid to biosurfactant were not ascertained.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s13205-021-02867-9.

摘要

未标记

本研究报告了从印度英帕尔洛克塔克湖分离出的一株细菌菌株LS14的全基因组测序和序列分析。本文报道的从头组装基因组大小为3,809,532 bp,GC含量为68%,包含3602个基因组特征,包括3551个蛋白质编码基因、46个tRNA和5个rRNA。使用AntiSMASH在线工具V3.0.5和KAAS(KEGG自动注释服务器)鉴定了分离菌株基因组中的生物表面活性剂生物合成基因簇。通过液滴塌陷、油置换和乳化指数证明了生物表面活性剂的存在。随后使用FTIR和LC-MS分析进行的化学表征揭示了含有表面活性素和萜烯的生物表面活性剂部分。此外,基因组序列中参与萜类合成途径的基因的存在可能解释了生物表面活性剂萜类骨架,但未确定萜类转化为生物表面活性剂后期阶段的基因。

补充信息

在线版本包含可在10.1007/s13205-021-02867-9获取的补充材料。

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