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印度食用豆类非特异性脂质转移蛋白的B细胞表位图谱绘制及负责IgE结合的关键残基鉴定。

Mapping B-Cell Epitopes for Nonspecific Lipid Transfer Proteins of Legumes Consumed in India and Identification of Critical Residues Responsible for IgE Binding.

作者信息

Mishra Ankita, Kumar Ashok

机构信息

Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India.

Centre for Environmental Science and Engineering, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India.

出版信息

Foods. 2021 Jun 2;10(6):1269. doi: 10.3390/foods10061269.

DOI:10.3390/foods10061269
PMID:34199581
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8227083/
Abstract

Nonspecific lipid transfer proteins (nsLTPs) have been categorized as panallergens and display widespread occurrence across plant-kingdom. Present study, investigated B-cell epitopes for LTPs from chickpea, mung-bean, cowpea, pigeon-pea, and soybean via in silico methods. In-silico predicted regions were evaluated for epitope-conservancy and property-based peptide similarity search by different allergen databases. Additionally, the in-silico predicted regions were compared with the experimentally validated epitopes of peach-LTP. Sequence-homology studies showed that chickpea and mung-bean LTPs shared significant homology, i.e., >70% and >60%, respectively, with other LTP allergens from lentil, garden-pea, peanut, etc. Phylogenetic-analysis also showed chickpea and mung-bean LTPs to be closely related to allergenic LTPs from lentil and peanut, respectively. Epitope-conservation analysis showed that two of the predicted B-cell epitopic regions in chickpea and mung-bean LTPs were also conserved in other allergenic LTPs from peach, peanut, garden-pea, lentil, and green-bean, and might serve as conserved B-cell epitopes of the LTP protein family. Property-distance index values for chickpea and mung-bean LTPs also showed that most of the epitopes shared similarity with the reported allergens like-lentil, peanut, apple, plum, tomato, etc. Present findings, may be explored for identification of probable allergenicity of novel LTPs, on the basis of the reported conserved B-cell epitopes, responsible for potential cross-reactivity.

摘要

非特异性脂质转移蛋白(nsLTPs)已被归类为泛过敏原,在植物界广泛存在。本研究通过计算机模拟方法研究了鹰嘴豆、绿豆、豇豆、木豆和大豆中LTPs的B细胞表位。通过不同的过敏原数据库,对计算机模拟预测的区域进行表位保守性评估和基于特性的肽相似性搜索。此外,将计算机模拟预测的区域与桃LTP经实验验证的表位进行比较。序列同源性研究表明,鹰嘴豆和绿豆的LTPs分别与来自小扁豆、豌豆、花生等的其他LTP过敏原具有显著的同源性,即分别>70%和>60%。系统发育分析还表明,鹰嘴豆和绿豆的LTPs分别与来自小扁豆和花生的致敏性LTPs密切相关。表位保守性分析表明,鹰嘴豆和绿豆LTPs中预测的两个B细胞表位区域在来自桃、花生、豌豆、小扁豆和四季豆的其他致敏性LTPs中也保守,可能作为LTP蛋白家族保守的B细胞表位。鹰嘴豆和绿豆LTPs的特性距离指数值也表明,大多数表位与报道的过敏原如小扁豆、花生、苹果、李子、番茄等具有相似性。基于报道的保守B细胞表位,本研究结果可用于探索新型LTPs可能的致敏性,这些表位可能导致潜在的交叉反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/93881767a5e6/foods-10-01269-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/c9d0d91fb2d5/foods-10-01269-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/75da5d687530/foods-10-01269-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/dd0719200f3b/foods-10-01269-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/55fd1c51c90a/foods-10-01269-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/93881767a5e6/foods-10-01269-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/c9d0d91fb2d5/foods-10-01269-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/75da5d687530/foods-10-01269-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/dd0719200f3b/foods-10-01269-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/55fd1c51c90a/foods-10-01269-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b775/8227083/93881767a5e6/foods-10-01269-g005a.jpg

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本文引用的文献

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Ann Pharmacother. 2021 Mar;55(3):344-353. doi: 10.1177/1060028020944370. Epub 2020 Jul 28.
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Lipid Transfer Protein allergy in the United Kingdom: Characterization and comparison with a matched Italian cohort.英国的脂质转运蛋白过敏:特征分析及与意大利匹配队列的比较。
Allergy. 2019 Jul;74(7):1340-1351. doi: 10.1111/all.13747. Epub 2019 Mar 14.
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A robust method for the estimation and visualization of IgE cross-reactivity likelihood between allergens belonging to the same protein family.
一种用于估计和可视化同一家族蛋白过敏原之间 IgE 交叉反应可能性的稳健方法。
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IgE Cross-Reactivity of Cashew Nut Allergens.腰果过敏原的IgE交叉反应性。
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iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction.iBCE-EL:一种用于改进线性 B 细胞表位预测的新集成学习框架。
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Spectrum of Allergens and Allergen Biology in India.印度的过敏原谱及过敏原生物学
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