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耐药性PBP2a“诱饵”蛋白与Eudragit E - 100和聚(马来酸 - 十八碳烯)聚合物单体单元相互作用的计算机模拟表征

In Silico Characterization of the Interaction between the PBP2a "Decoy" Protein of Resistant and the Monomeric Units of Eudragit E-100 and Poly(Maleic Acid--Octadecene) Polymers.

作者信息

Liscano Yamil, Amú Ana, González Astrid, Oñate-Garzón Jose, Salamanca Constain H

机构信息

Grupo de Investigación en Química y Biotecnología (QUIBIO), Facultad de Ciencias Básicas, Universidad Santiago de Cali, Calle 5 No. 62-00, Cali 760035, Colombia.

Departamento de Farmacia, Facultad de Ciencias Farmacéuticas y de Alimentos, Universidad de Antioquia, Calle 67 No. 53-108, Medellín 050010, Colombia.

出版信息

Polymers (Basel). 2021 Jul 15;13(14):2320. doi: 10.3390/polym13142320.

Abstract

Antimicrobial treatment alternatives for methicillin-resistant (MRSA) are increasingly limited. MRSA strains are resistant to methicillin due to the formation of β-lactamase enzymes, as well as the acquisition of the mecA gene, which encodes the penicillin-binding protein (PBP2a) that reduces the affinity for β-lactam drugs. Previous studies have shown that the use of ampicillin-loaded nanoparticles can improve antimicrobial activity on resistant strains. However, the biological mechanism of this effect has not yet been properly elucidated. Therefore, this short communication focused on characterizing the in silico interactions of the PBP2a membrane receptor protein from against the monomeric units of two polymeric materials previously used in the development of different nanoparticles loaded with ampicillin. Such polymers correspond to Eudragit E-100 chloride (EuCl) and the sodium salt of poly(maleic acid--octadecene) (PAM-18Na). For this, molecular coupling studies were carried out in the active site of the PBP2a protein with the monomeric units of both polymers in neutral and ionized form, as well as with ampicillin antibiotic (model β-lactam drug). The results showed that ampicillin, as well as the monomeric units of EuCl and PAM18Na, described a slight binding free energy to the PBPa2 protein. In addition, it was found that the amino acids of the active site of the PBPa2 protein have interactions of different types and intensities, suggesting, in turn, different forms of protein-substrate coupling.

摘要

耐甲氧西林金黄色葡萄球菌(MRSA)的抗菌治疗替代方案越来越有限。MRSA菌株由于形成β-内酰胺酶以及获得mecA基因而对甲氧西林耐药,mecA基因编码青霉素结合蛋白(PBP2a),该蛋白降低了对β-内酰胺类药物的亲和力。先前的研究表明,使用载有氨苄西林的纳米颗粒可以提高对耐药菌株的抗菌活性。然而,这种作用的生物学机制尚未得到充分阐明。因此,本简短通讯重点描述了来自[具体来源未提及]的PBP2a膜受体蛋白与先前用于开发不同载有氨苄西林纳米颗粒的两种聚合材料的单体单元之间的计算机模拟相互作用。此类聚合物分别为氯化Eudragit E-100(EuCl)和聚(马来酸-十八碳烯)钠盐(PAM-18Na)。为此,在PBP2a蛋白的活性位点与两种聚合物的中性和离子化形式的单体单元以及氨苄西林抗生素(典型β-内酰胺类药物)进行了分子偶联研究。结果表明,氨苄西林以及EuCl和PAM18Na的单体单元与PBPa2蛋白的结合自由能略有降低。此外,发现PBPa2蛋白活性位点的氨基酸具有不同类型和强度的相互作用,这反过来又表明了蛋白质-底物偶联的不同形式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbb0/8309622/c35421b83520/polymers-13-02320-g001.jpg

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