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计算模型预测草本浸剂“欧洽塔”对新冠病毒的潜在作用。

Computational modeling predicts potential effects of the herbal infusion "horchata" against COVID-19.

作者信息

Tejera Eduardo, Pérez-Castillo Yunierkis, Toscano Gisselle, Noboa Ana Lucía, Ochoa-Herrera Valeria, Giampieri Francesca, Álvarez-Suarez José M

机构信息

Grupo de Bio-Quimioinformática, Universidad de Las Américas, Quito, Ecuador; Facultad de Ingeniería y Ciencias Aplicadas, Universidad de Las Américas, Quito, Ecuador.

Grupo de Bio-Quimioinformática, Universidad de Las Américas, Quito, Ecuador; Escuela de Ciencias Físicas y Matemáticas, Universidad de Las Américas, Quito, Ecuador.

出版信息

Food Chem. 2022 Jan 1;366:130589. doi: 10.1016/j.foodchem.2021.130589. Epub 2021 Jul 14.

Abstract

Bioactive plant-derived molecules have emerged as therapeutic alternatives in the fight against the COVID-19 pandemic. In this investigation, principal bioactive compounds of the herbal infusion "horchata" from Ecuador were studied as potential novel inhibitors of the SARS-CoV-2 virus. The chemical composition of horchata was determined through a HPLC-DAD/ESI-MS and GC-MS analysis while the inhibitory potential of the compounds on SARS-CoV-2 was determined by a computational prediction using various strategies, such as molecular docking and molecular dynamics simulations. Up to 51 different compounds were identified. The computational analysis of predicted targets reveals the compounds' possible anti-inflammatory (no steroidal) and antioxidant effects. Three compounds were identified as candidates for M inhibition: benzoic acid, 2-(ethylthio)-ethyl ester, l-Leucine-N-isobutoxycarbonyl-N-methyl-heptyl and isorhamnetin and for PL: isorhamnetin-3-O-(6-Orhamnosyl-galactoside), dihydroxy-methoxyflavanone and dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl]oxy-3,4,5-trihydroxyoxane-2-carboxylic acid. Our results suggest the potential of Ecuadorian horchata infusion as a starting scaffold for the development of new inhibitors of the SARS-CoV-2 M and PL enzymes.

摘要

生物活性植物衍生分子已成为抗击新冠疫情的治疗替代品。在本研究中,对厄瓜多尔草本浸剂“horchata”的主要生物活性化合物作为新型潜在的严重急性呼吸综合征冠状病毒2(SARS-CoV-2)病毒抑制剂进行了研究。通过高效液相色谱-二极管阵列检测/电喷雾电离质谱(HPLC-DAD/ESI-MS)和气相色谱-质谱联用(GC-MS)分析确定了horchata的化学成分,同时通过使用多种策略(如分子对接和分子动力学模拟)的计算预测来确定这些化合物对SARS-CoV-2的抑制潜力。共鉴定出多达51种不同的化合物。对预测靶点的计算分析揭示了这些化合物可能具有的抗炎(非甾体)和抗氧化作用。确定了三种化合物为M蛋白抑制的候选物:苯甲酸-2-(乙硫基)乙酯、L-亮氨酸-N-异丁氧羰基-N-甲基庚酯和异鼠李素;以及三种化合物为木瓜蛋白酶样蛋白酶(PL)抑制的候选物:异鼠李素-3-O-(6-O-鼠李糖基-半乳糖苷)、二羟基-甲氧基黄酮和(二羟基苯基)-5-羟基-4-氧代色烯-7-基]氧基-3,4,5-三羟基氧杂环戊烷-2-羧酸。我们的结果表明,厄瓜多尔horchata浸剂有潜力作为开发SARS-CoV-2 M和PL酶新抑制剂的起始支架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a32/8314115/f56e041d066a/gr1_lrg.jpg

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