Gold modified thiol graphene (Au@HS-rGO) was prepared and applied as sensing platform for constructing the electrochemical aptasensor. While gold-palladium modified zirconium metal-organic frameworks (AuPd@UiO-67) nanozyme was employed as signal enhancer for detecting mercury ions (Hg) sensitively. Herein, gold nanoparticles (Au NPs) were modified on HS-rGO to form the thin Au@HS-rGO layer. Then the substrate strand (Apt1) was modified on the platform through Au-S bond. The signal strand (Apt2) was further decorated on the platform in the presence of Hg. Herein, the Apt2 was labeled with AuPd@UiO-67 nanozyme, which exhibited catalase-like properties to catalyze HO, thereby generating the electrical signal. With the concentration of Hg increased, the amount of modified Apt2-AuPd@UiO-67 increased, leading to the rise of current response. Since the current responses were linear with concentration of Hg, the detection of Hg can be achieved. Under the optimum conditions, the prepared electrochemical aptasensor exhibited wide linear range from 1.0 nmol/L to 1.0 mmol/L, along with a low detection limit of 0.16 nmol/L. Moreover, the electrochemical aptasensor showed excellent selectivity, reproducibility and stability, together with superior performance in actual water sample analysis. Therefore, this proposed electrochemical aptasensor may have promising applications and provide references for environmental monitoring and management.