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通过 NMR 溶剂顺磁弛豫增强探测共溶质诱导蛋白质变性的原子视角。

Atomic view of cosolute-induced protein denaturation probed by NMR solvent paramagnetic relaxation enhancement.

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520.

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520

出版信息

Proc Natl Acad Sci U S A. 2021 Aug 24;118(34). doi: 10.1073/pnas.2112021118.

Abstract

The cosolvent effect arises from the interaction of cosolute molecules with a protein and alters the equilibrium between native and unfolded states. Denaturants shift the equilibrium toward the latter, while osmolytes stabilize the former. The molecular mechanism whereby cosolutes perturb protein stability is still the subject of considerable debate. Probing the molecular details of the cosolvent effect is experimentally challenging as the interactions are very weak and transient, rendering them invisible to most conventional biophysical techniques. Here, we probe cosolute-protein interactions by means of NMR solvent paramagnetic relaxation enhancement together with a formalism we recently developed to quantitatively describe, at atomic resolution, the energetics and dynamics of cosolute-protein interactions in terms of a concentration normalized equilibrium average of the interspin distance, [Formula: see text], and an effective correlation time, τ The system studied is the metastable drkN SH3 domain, which exists in dynamic equilibrium between native and unfolded states, thereby permitting us to probe the interactions of cosolutes with both states simultaneously under the same conditions. Two paramagnetic cosolute denaturants were investigated, one neutral and the other negatively charged, differing in the presence of a carboxyamide group versus a carboxylate. Our results demonstrate that attractive cosolute-protein backbone interactions occur largely in the unfolded state and some loop regions in the native state, electrostatic interactions reduce the [Formula: see text] values, and temperature predominantly impacts interactions with the unfolded state. Thus, destabilization of the native state in this instance arises predominantly as a consequence of interactions of the cosolutes with the unfolded state.

摘要

溶剂效应源于共溶剂分子与蛋白质的相互作用,改变了天然态和展开态之间的平衡。变性剂使平衡向后者移动,而渗透压调节剂则使前者稳定。共溶剂扰乱蛋白质稳定性的分子机制仍然是一个相当有争议的话题。由于相互作用非常微弱和短暂,用大多数常规生物物理技术都无法探测到共溶剂对蛋白质稳定性的影响,因此探测溶剂效应的分子细节在实验上具有挑战性。在这里,我们通过 NMR 溶剂顺磁弛豫增强(paramagnetic relaxation enhancement)结合我们最近开发的一种形式来探测共溶剂-蛋白质相互作用,这种形式以一种浓度归一化的平衡平均自旋间距离[Formula: see text]和有效相关时间τ来定量描述共溶剂-蛋白质相互作用的能量和动力学,达到原子分辨率。研究的系统是亚稳定的 drkN SH3 结构域,它在天然态和展开态之间存在动态平衡,从而使我们能够在相同条件下同时探测共溶剂与两种状态的相互作用。研究了两种顺磁共溶剂变性剂,一种是中性的,另一种是带负电荷的,它们在存在羧酰胺基团和羧酸盐方面有所不同。我们的结果表明,吸引力共溶剂-蛋白质骨架相互作用主要发生在展开态和天然态的一些环区,静电相互作用降低了[Formula: see text]值,而温度主要影响与展开态的相互作用。因此,在这种情况下,天然态的失稳主要是由于共溶剂与展开态的相互作用引起的。

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