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一种具有抗动物源冠状病毒活性的新型框架移位抑制剂。

A Novel Frameshifting Inhibitor Having Antiviral Activity against Zoonotic Coronaviruses.

机构信息

Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.

出版信息

Viruses. 2021 Aug 18;13(8):1639. doi: 10.3390/v13081639.


DOI:10.3390/v13081639
PMID:34452503
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8402677/
Abstract

Recent outbreaks of zoonotic coronaviruses, such as Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), have caused tremendous casualties and great economic shock. Although some repurposed drugs have shown potential therapeutic efficacy in clinical trials, specific therapeutic agents targeting coronaviruses have not yet been developed. During coronavirus replication, a replicase gene cluster, including RNA-dependent RNA polymerase (RdRp), is alternatively translated via a process called -1 programmed ribosomal frameshift (-1 PRF) by an RNA pseudoknot structure encoded in viral RNAs. The coronavirus frameshifting has been identified previously as a target for antiviral therapy. In this study, the frameshifting efficiencies of MERS-CoV, SARS-CoV and SARS-CoV-2 were determined using an in vitro -1 PRF assay system. Our group has searched approximately 9689 small molecules to identify potential -1 PRF inhibitors. Herein, we found that a novel compound, 2-(5-acetylthiophen-2yl)furo[2,3-]quinoline (KCB261770), inhibits the frameshifting of MERS-CoV and effectively suppresses viral propagation in MERS-CoV-infected cells. The inhibitory effects of 87 derivatives of furo[2,3-]quinolines were also examined showing less prominent inhibitory effect when compared to compound KCB261770. We demonstrated that KCB261770 inhibits the frameshifting without suppressing cap-dependent translation. Furthermore, this compound was able to inhibit the frameshifting, to some extent, of SARS-CoV and SARS-CoV-2. Therefore, the novel compound 2-(5-acetylthiophen-2yl)furo[2,3-]quinoline may serve as a promising drug candidate to interfere with pan-coronavirus frameshifting.

摘要

最近爆发的人畜共患冠状病毒,如中东呼吸综合征冠状病毒(MERS-CoV)和严重急性呼吸综合征冠状病毒 2(SARS-CoV-2),已造成巨大的人员伤亡和巨大的经济冲击。虽然一些重新利用的药物在临床试验中显示出了潜在的治疗效果,但尚未开发出针对冠状病毒的特定治疗药物。在冠状病毒复制过程中,一个复制酶基因簇,包括 RNA 依赖性 RNA 聚合酶(RdRp),通过病毒 RNA 编码的 RNA 假结结构的 -1 位程序性核糖体移码(-1 PRF)过程被交替翻译。冠状病毒的框架移位先前已被确定为抗病毒治疗的靶点。在这项研究中,使用体外 -1 PRF 测定系统确定了 MERS-CoV、SARS-CoV 和 SARS-CoV-2 的框架移位效率。我们小组已经搜索了大约 9689 种小分子,以确定潜在的 -1 PRF 抑制剂。在此,我们发现一种新型化合物 2-(5-乙酰基噻吩-2-基)呋喃并[2,3-]喹啉(KCB261770),可抑制 MERS-CoV 的框架移位,并有效抑制 MERS-CoV 感染细胞中的病毒繁殖。还检查了 87 种呋喃并[2,3-]喹啉衍生物的抑制作用,与化合物 KCB261770 相比,其抑制作用不那么明显。我们证明 KCB261770 抑制框架移位而不抑制帽依赖性翻译。此外,该化合物能够在一定程度上抑制 SARS-CoV 和 SARS-CoV-2 的框架移位。因此,新型化合物 2-(5-乙酰基噻吩-2-基)呋喃并[2,3-]喹啉可能是一种有前途的候选药物,可用于干扰泛冠状病毒的框架移位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/273ecc6b7e34/viruses-13-01639-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/788c4a47a110/viruses-13-01639-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/13f4e02b43e4/viruses-13-01639-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/d54f4c1e6720/viruses-13-01639-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/19d8badb5511/viruses-13-01639-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/d98486ba4e63/viruses-13-01639-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/273ecc6b7e34/viruses-13-01639-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/788c4a47a110/viruses-13-01639-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/13f4e02b43e4/viruses-13-01639-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/d54f4c1e6720/viruses-13-01639-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/19d8badb5511/viruses-13-01639-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/d98486ba4e63/viruses-13-01639-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/152f/8402677/273ecc6b7e34/viruses-13-01639-g006.jpg

相似文献

[1]
A Novel Frameshifting Inhibitor Having Antiviral Activity against Zoonotic Coronaviruses.

Viruses. 2021-8-18

[2]
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[3]
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Proc Natl Acad Sci U S A. 2021-6-29

[4]
Abelson Kinase Inhibitors Are Potent Inhibitors of Severe Acute Respiratory Syndrome Coronavirus and Middle East Respiratory Syndrome Coronavirus Fusion.

J Virol. 2016-9-12

[5]
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[6]
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[7]
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[8]
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Antiviral Res. 2011-4-23

[9]
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Antimicrob Agents Chemother. 2014-8

[10]
Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2).

J Biol Chem. 2020-6-22

引用本文的文献

[1]
Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.

PLoS Comput Biol. 2024-5

[2]
Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics.

Nucleic Acids Res. 2023-11-10

[3]
Modelling the structures of frameshift-stimulatory pseudoknots from representative bat coronaviruses.

PLoS Comput Biol. 2023-5

[4]
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.

PLoS Comput Biol. 2023-2

[5]
Distinct Molecular Mechanisms Characterizing Pathogenesis of SARS-CoV-2.

J Microbiol Biotechnol. 2022-9-28

[6]
RT-qPCR as a screening platform for mutational and small molecule impacts on structural stability of RNA tertiary structures.

RSC Chem Biol. 2022-6-6

[7]
Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses.

Viruses. 2022-1-18

本文引用的文献

[1]
Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.

Science. 2021-6-18

[2]
Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.

Nucleic Acids Res. 2020-12-16

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Anti-Frameshifting Ligand Active against SARS Coronavirus-2 Is Resistant to Natural Mutations of the Frameshift-Stimulatory Pseudoknot.

J Mol Biol. 2020-9-11

[4]
Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2).

J Biol Chem. 2020-6-22

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Annu Rev Microbiol. 2019-6-21

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Protein-directed ribosomal frameshifting temporally regulates gene expression.

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