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适应性免疫受体谱测序的方法和进展。

The methods and advances of adaptive immune receptors repertoire sequencing.

机构信息

Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, China.

State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, China.

出版信息

Theranostics. 2021 Aug 19;11(18):8945-8963. doi: 10.7150/thno.61390. eCollection 2021.

Abstract

The adaptive immune response is a powerful tool, capable of recognizing, binding to, and neutralizing a vast number of internal and external threats via T or B lymphatic receptors with widespread sets of antigen specificities. The emergence of high-throughput sequencing technology and bioinformatics provides opportunities for research in the fields of life sciences and medicine. The analysis and annotation for immune repertoire data can reveal biologically meaningful information, including immune prediction, target antigens, and effective evaluation. Continuous improvements of the immunological repertoire sequencing methods and analysis tools will help to minimize the experimental and calculation errors and realize the immunological information to meet the clinical requirements. That said, the clinical application of adaptive immune repertoire sequencing requires appropriate experimental methods and standard analytical tools. At the population cell level, we can acquire the overview of cell groups, but the information about a single cell is not obtained accurately. The information that is ignored may be crucial for understanding the heterogeneity of each cell, gene expression and drug response. The combination of high-throughput sequencing and single-cell technology allows us to obtain single-cell information with low-cost and high-throughput. In this review, we summarized the current methods and progress in this area.

摘要

适应性免疫反应是一种强大的工具,能够通过 T 或 B 淋巴细胞受体识别、结合和中和大量内部和外部威胁,这些受体具有广泛的抗原特异性。高通量测序技术和生物信息学的出现为生命科学和医学领域的研究提供了机会。免疫受体库数据的分析和注释可以揭示具有生物学意义的信息,包括免疫预测、靶抗原和有效评估。不断改进免疫受体测序方法和分析工具将有助于最大限度地减少实验和计算误差,并实现免疫信息满足临床需求。也就是说,适应性免疫受体测序的临床应用需要适当的实验方法和标准分析工具。在群体细胞水平上,我们可以获得细胞群的概述,但不能准确获得单个细胞的信息。忽略的信息对于理解每个细胞的异质性、基因表达和药物反应可能是至关重要的。高通量测序和单细胞技术的结合使我们能够以低成本、高通量的方式获得单细胞信息。在这篇综述中,我们总结了该领域目前的方法和进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a58b/8419057/4c3e71ca8961/thnov11p8945g001.jpg

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