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Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken.

作者信息

Xing Siyuan, Liu Ranran, Zhao Guiping, Groenen Martien A M, Madsen Ole, Liu Lu, Zheng Maiqing, Wang Qiao, Wu Zhou, Crooijmans Richard P M A, Wen Jie

机构信息

State Key Laboratory of Animal Nutrition, Key Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.

Animal Breeding and Genomics, Wageningen University & Research, Wageningen, Netherlands.

出版信息

Front Genet. 2021 Sep 10;12:723519. doi: 10.3389/fgene.2021.723519. eCollection 2021.


DOI:10.3389/fgene.2021.723519
PMID:34567076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8461244/
Abstract

The liver is the central metabolic organ of animals. In chicken, knowledge on the relationship between gene expression in the liver and fat deposition during development is still limited. A time-course transcriptomic study from the embryonic (day 12) to the egg-producing period (day 180 after hatch) was performed to profile slow-growing meat type chicken liver gene expression and to investigate its correlation with abdominal fat deposition. The transcriptome profiles showed a separation of the different developmental stages. In total, 13,096 genes were ubiquitously expressed at all the tested developmental stages. The analysis of differentially expressed genes between adjacent developmental stages showed that biosynthesis of unsaturated fatty acids pathway was enriched from day 21 to day 140 after hatch. The correlation between liver gene expression and the trait abdominal fat weight (AFW) was analyzed by weighted gene co-expression network analysis. The genes , , , and were identified as hub genes in AFW positively correlated modules, which suggested important roles of these genes in the lipid metabolism in chicken liver. Our results provided a resource of developmental transcriptome profiles in chicken liver and suggested that the gene among other detected genes can be used as a candidate gene for selecting low AFW chickens.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/1e9ddab70019/fgene-12-723519-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/a0b7f8d58d0b/fgene-12-723519-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/51f2c8e0a83f/fgene-12-723519-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/a2980ebb486e/fgene-12-723519-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/f0fc8c966868/fgene-12-723519-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/d40d90bf8637/fgene-12-723519-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/1e9ddab70019/fgene-12-723519-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/a0b7f8d58d0b/fgene-12-723519-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/51f2c8e0a83f/fgene-12-723519-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/a2980ebb486e/fgene-12-723519-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/f0fc8c966868/fgene-12-723519-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/d40d90bf8637/fgene-12-723519-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/8461244/1e9ddab70019/fgene-12-723519-g006.jpg

相似文献

[1]
Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken.

Front Genet. 2021-9-10

[2]
RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development.

Front Genet. 2020-8-28

[3]
Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content.

BMC Genomics. 2018-5-23

[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Decoding chicken growth regulation through multi-omics insights and emerging genetic tools for growth optimization.

Poult Sci. 2025-7-5

[2]
Multi-Omics Insights into Regulatory Mechanisms Underlying Differential Deposition of Intramuscular and Abdominal Fat in Chickens.

Biomolecules. 2025-1-15

[3]
Multi-omics analysis and experimental verification reveal testicular fatty acid metabolism disorder in non-obstructive azoospermia.

Zool Res. 2025-1-18

[4]
Liver transcriptomics-metabolomics integration reveals biological pathways associated with fetal programming in beef cattle.

Sci Rep. 2024-11-12

[5]
Weighted gene co-expression network analysis identifies important modules and hub genes involved in the regulation of breast muscle yield in broilers.

Anim Biosci. 2024-10

[6]
Meta-analysis of RNA-Seq datasets highlights novel genes/pathways involved in fat deposition in fat-tail of sheep.

Front Vet Sci. 2023-5-12

[7]
Gene Co-Expression Network Analysis Reveals the Hub Genes and Key Pathways Associated with Resistance to Enteritidis Colonization in Chicken.

Int J Mol Sci. 2023-3-2

[8]
Large-scale genomic and transcriptomic analyses elucidate the genetic basis of high meat yield in chickens.

J Adv Res. 2024-1

[9]
Liver Transcriptome Response to Heat Stress in Beijing You Chickens and Guang Ming Broilers.

Genes (Basel). 2022-2-25

本文引用的文献

[1]
RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development.

Front Genet. 2020-8-28

[2]
Adipose Tissue-Liver Cross Talk in the Control of Whole-Body Metabolism: Implications in Nonalcoholic Fatty Liver Disease.

Gastroenterology. 2020-5

[3]
Effect of Divergent Selection for Intramuscular Fat Content on Muscle Lipid Metabolism in Chickens.

Animals (Basel). 2019-12-18

[4]
[The cell cycle pathway regulates chicken abdominal fat deposition as revealed by transcriptome sequencing].

Yi Chuan. 2019-10-20

[5]
New Insights into the Liver-Visceral Adipose Axis During Hepatic Resection and Liver Transplantation.

Cells. 2019-9-18

[6]
Gene expression across mammalian organ development.

Nature. 2019-6-26

[7]
Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB.

Nucleic Acids Res. 2019-1-8

[8]
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors.

Nucleic Acids Res. 2019-1-8

[9]
Transcriptional shifts account for divergent resource allocation in feed efficient broiler chickens.

Sci Rep. 2018-8-27

[10]
Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content.

BMC Genomics. 2018-5-23

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