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微生物群落的宏基因组学和宏转录组学特征分析,该微生物群落可同时催化产生能量和储存能量的电极反应。

Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions.

机构信息

Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.

出版信息

Appl Environ Microbiol. 2021 Nov 24;87(24):e0167621. doi: 10.1128/AEM.01676-21. Epub 2021 Oct 6.

Abstract

Electroactive bacteria are living catalysts, mediating energy-generating reactions at anodes or energy storage reactions at cathodes via extracellular electron transfer (EET). The Cathode-ANode (CANode) biofilm community was recently shown to facilitate both reactions; however, the identities of the primary constituents and underlying molecular mechanisms remain unknown. Here, we used metagenomics and metatranscriptomics to characterize the CANode biofilm. We show that a previously uncharacterized member of the family -2, which had <1% relative abundance, had the highest relative gene expression and accounted for over 60% of all differentially expressed genes. At the anode potential, differential expression of genes for a conserved flavin oxidoreductase (Flx) and heterodisulfide reductase (Hdr) known to be involved in ethanol oxidation suggests a source of electrons for the energy-generating reaction. Genes for sulfate and carbon dioxide reduction pathways were expressed by -2 at both potentials and are the proposed energy storage reactions. Reduction reactions may be mediated by direct electron uptake from the electrode or from hydrogen generated at the cathode potential. The -2 genome is predicted to encode at least 85 multiheme (≥3 hemes) -type cytochromes, some with as many as 26 heme-binding domains, that could facilitate reversible electron transfer with the electrode. Gene expression in other CANode biofilm species was also affected by the electrode potential, although to a lesser extent, and we cannot rule out their contribution to observed current. Results provide evidence of gene expression linked to energy storage and energy-generating reactions and will enable development of the CANode biofilm as a microbially driven rechargeable battery. Microbial electrochemical technologies (METs) rely on electroactive bacteria to catalyze energy-generating and energy storage reactions at electrodes. Known electroactive bacteria are not equally capable of both reactions, and METs are typically configured to be unidirectional. Here, we report on genomic and transcriptomic characterization of a recently described microbial electrode community called the Cathode-ANode (CANode). The CANode community is able to generate or store electrical current based on the electrode potential. During periods where energy is not needed, electrons generated from a renewable source, such as solar power, could be converted into energy storage compounds to later be reversibly oxidized by the same microbial catalyst. Thus, the CANode system can be thought of as a living "rechargeable battery." Results show that a single organism may be responsible for both reactions demonstrating a new paradigm for electroactive bacteria.

摘要

电活性细菌是活的催化剂,通过细胞外电子传递 (EET) 在阳极介导能量产生反应或在阴极介导能量存储反应。最近的研究表明,阴极-阳极 (CANode) 生物膜群落可以促进这两种反应;然而,主要成分的身份和潜在的分子机制仍不清楚。在这里,我们使用宏基因组学和宏转录组学来描述 CANode 生物膜。我们表明,以前未被表征的家族 -2 的一个成员,其相对丰度<1%,具有最高的相对基因表达,并占所有差异表达基因的 60%以上。在阳极电位下,与乙醇氧化有关的保守黄素氧化还原酶 (Flx) 和异二硫化物还原酶 (Hdr) 的基因表达表明,这是能量产生反应的电子来源。在两个电位下,-2 都表达硫酸盐和二氧化碳还原途径的基因,这是提出的能量存储反应。还原反应可能通过直接从电极摄取电子或从阴极电位下产生的氢气来介导。-2 基因组预测至少编码 85 种多血红素(≥3 个血红素)-型细胞色素,其中一些具有多达 26 个血红素结合结构域,这可以促进与电极的可逆电子转移。其他 CANode 生物膜物种的基因表达也受到电极电位的影响,尽管程度较小,我们不能排除它们对观察到的电流的贡献。研究结果提供了与能量存储和能量产生反应相关的基因表达证据,并将使 CANode 生物膜能够作为微生物驱动的可充电电池进行开发。微生物电化学技术 (MET) 依赖于电活性细菌在电极上催化能量产生和能量存储反应。已知的电活性细菌并非都能同时进行这两种反应,而且 MET 通常配置为单向。在这里,我们报告了最近描述的微生物电极群落 Cathode-ANode (CANode) 的基因组和转录组特征。CANode 群落能够根据电极电位产生或存储电流。在不需要能量的时期,来自可再生能源(如太阳能)的电子可以转化为能量存储化合物,稍后由相同的微生物催化剂可逆地氧化。因此,CANode 系统可以被认为是一种活的“可充电电池”。研究结果表明,单个生物体可能同时负责这两种反应,为电活性细菌提供了一个新的范例。

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