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tRNA 鸟苷酸修饰酶 QueH 是参与 tRNA 鸟苷酸修饰酶的独特金属酶。

Epoxyqueuosine Reductase QueH in the Biosynthetic Pathway to tRNA Queuosine Is a Unique Metalloenzyme.

机构信息

Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.

Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.

出版信息

Biochemistry. 2021 Oct 26;60(42):3152-3161. doi: 10.1021/acs.biochem.1c00164. Epub 2021 Oct 15.

DOI:10.1021/acs.biochem.1c00164
PMID:34652139
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8884141/
Abstract

Queuosine is a structurally unique and functionally important tRNA modification, widely distributed in eukaryotes and bacteria. The final step of queuosine biosynthesis is the reduction/deoxygenation of epoxyqueuosine to form the cyclopentene motif of the nucleobase. The chemistry is performed by the structurally and functionally characterized cobalamin-dependent QueG. However, the gene is absent from several bacteria that otherwise retain queuosine biosynthesis machinery. Members of the IPR003828 family (previously known as DUF208) have been recently identified as nonorthologous replacements of QueG, and this family was renamed QueH. Here, we present the structural characterization of QueH from . The structure reveals an unusual active site architecture with a [4Fe-4S] metallocluster along with an adjacent coordinated iron metal. The juxtaposition of the cofactor and coordinated metal ion predicts a unique mechanism for a two-electron reduction/deoxygenation of epoxyqueuosine. To support the structural characterization, biochemical and genomic analyses are presented. Overall, this work reveals new diversity in the chemistry of iron/sulfur-dependent enzymes and novel insight into the last step of this widely conserved tRNA modification.

摘要

Queuosine 是一种结构独特且功能重要的 tRNA 修饰物,广泛分布于真核生物和细菌中。Queuosine 生物合成的最后一步是将 epoxyqueuosine 还原/脱氧,形成核苷碱基的环戊烯基结构。这一化学反应由结构和功能上已被明确的钴胺素依赖型 QueG 完成。然而,有几个细菌尽管保留了 queuosine 生物合成机制,但却缺失了 基因。最近,人们发现 IPR003828 家族(以前称为 DUF208)成员是非同源替代 QueG 的物质,因此该家族被重新命名为 QueH。本文介绍了来自 的 QueH 的结构特征。该结构揭示了一种不寻常的活性位点架构,其中包含一个 [4Fe-4S] 金属簇以及相邻配位的铁金属。辅助因子和配位金属离子的并置预测了 epoxyqueuosine 的双电子还原/脱氧的独特机制。为了支持结构特征,还进行了生化和基因组分析。总的来说,这项工作揭示了铁/硫依赖性酶化学的新多样性,并为这一广泛保守的 tRNA 修饰的最后一步提供了新的见解。