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在可培养的细菌中,积极的相互作用很常见。

Positive interactions are common among culturable bacteria.

作者信息

Kehe Jared, Ortiz Anthony, Kulesa Anthony, Gore Jeff, Blainey Paul C, Friedman Jonathan

机构信息

Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

出版信息

Sci Adv. 2021 Nov 5;7(45):eabi7159. doi: 10.1126/sciadv.abi7159.

Abstract

Interspecies interactions shape the structure and function of microbial communities. In particular, positive, growth-promoting interactions can substantially affect the diversity and productivity of natural and engineered communities. However, the prevalence of positive interactions and the conditions in which they occur are not well understood. To address this knowledge gap, we used kChip, an ultrahigh-throughput coculture platform, to measure 180,408 interactions among 20 soil bacteria across 40 carbon environments. We find that positive interactions, often described to be rare, occur commonly and primarily as parasitisms between strains that differ in their carbon consumption profiles. Notably, nongrowing strains are almost always promoted by strongly growing strains (85%), suggesting a simple positive interaction–mediated approach for cultivation, microbiome engineering, and microbial consortium design.

摘要

种间相互作用塑造了微生物群落的结构和功能。特别是,积极的、促进生长的相互作用会极大地影响自然群落和工程群落的多样性和生产力。然而,积极相互作用的普遍性及其发生的条件尚未得到充分了解。为了填补这一知识空白,我们使用了kChip(一种超高通量共培养平台)来测量40种碳环境中20种土壤细菌之间的180,408种相互作用。我们发现,通常被认为罕见的积极相互作用普遍存在,并且主要表现为碳消耗模式不同的菌株之间的寄生关系。值得注意的是,不生长的菌株几乎总是受到强烈生长菌株的促进(85%),这为培养、微生物组工程和微生物群落设计提供了一种简单的由积极相互作用介导的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c692/8570599/1ffc3f25506b/sciadv.abi7159-f1.jpg

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