Nie Gang, Yang Zhongfu, He Jie, Liu Aiyu, Chen Jiayi, Wang Shuan, Wang Xia, Feng Guangyan, Li Dandan, Peng Yan, Huang Linkai, Zhang Xinquan
Department of Forage Science, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, China.
Front Plant Sci. 2021 Nov 4;12:766550. doi: 10.3389/fpls.2021.766550. eCollection 2021.
The NAC transcription factor family is deemed to be a large plant-specific gene family that plays important roles in plant development and stress response. is commonly planted in vast marginal land as forage, ornamental grass, or bioenergy crop which demand a relatively high resistance to abiotic stresses. The recent release of a draft chromosome-scale assembly genome of provided a basic platform for the genome-wide investigation of NAC proteins. In this study, a total of 261 genes were identified and a complete overview of the gene family was presented, including gene structure, conserved motif compositions, chromosomal distribution, and gene duplications. Results showed that gene length, molecular weights (MW), and theoretical isoelectric points (pI) of NAC family were varied, while gene structure and motifs were relatively conserved. Chromosomal mapping analysis found that the genes were unevenly distributed on 19 chromosomes, and the interchromosomal evolutionary analysis showed that nine pairs of tandem duplicates genes and 121 segmental duplications were identified, suggesting that gene duplication, especially segmental duplication, is possibly associated with the amplification of gene family. The expression patterns of 14 genes from SNAC subgroup were analyzed under high salinity, PEG, and heavy metals, and multiple genes could be induced by the treatment. These results will provide a very useful reference for follow-up study of the functional characteristics of genes in the mechanism of stress-responsive and potential roles in the development of .
NAC转录因子家族被认为是一个大型的植物特异性基因家族,在植物发育和胁迫响应中发挥着重要作用。[植物名称]通常种植在广阔的边际土地上,作为饲料、观赏草或生物能源作物,这些植物需要对非生物胁迫具有较高的抗性。最近发布的[植物名称]染色体水平的基因组草图为全基因组研究NAC蛋白提供了一个基础平台。在本研究中,共鉴定出261个[植物名称]NAC基因,并对该基因家族进行了全面概述,包括基因结构、保守基序组成、染色体分布和基因重复情况。结果表明,NAC家族基因的长度、分子量(MW)和理论等电点(pI)各不相同,而基因结构和基序相对保守。染色体定位分析发现,[植物名称]NAC基因不均匀地分布在19条染色体上,染色体间进化分析表明,共鉴定出9对串联重复基因和121个片段重复,这表明基因重复,尤其是片段重复,可能与[植物名称]NAC基因家族的扩增有关。分析了[植物名称]SNAC亚组中14个基因在高盐、PEG和重金属处理下的表达模式,多个[植物名称]NAC基因可被这些处理诱导。这些结果将为后续研究[植物名称]NAC基因在胁迫响应机制中的功能特性以及在[植物名称]发育中的潜在作用提供非常有用的参考。