Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology (TUAT), Tokyo, Japan.
Graduate School of Engineering, Yokohama National University, Yokohama, Japan.
Nat Nanotechnol. 2022 Jan;17(1):67-75. doi: 10.1038/s41565-021-01008-w. Epub 2021 Nov 22.
The amino-acid sequence of a protein encodes information on its three-dimensional structure and specific functionality. De novo design has emerged as a method to manipulate the primary structure for the development of artificial proteins and peptides with desired functionality. This paper describes the de novo design of a pore-forming peptide, named SV28, that has a β-hairpin structure and assembles to form a stable nanopore in a bilayer lipid membrane. This large synthetic nanopore is an entirely artificial device for practical applications. The peptide forms multidispersely sized nanopore structures ranging from 1.7 to 6.3 nm in diameter and can detect DNAs. To form a monodispersely sized nanopore, we redesigned the SV28 by introducing a glycine-kink mutation. The resulting redesigned peptide forms a monodisperse pore with a diameter of 1.7 nm leading to detection of a single polypeptide chain. Such de novo design of a β-hairpin peptide has the potential to create artificial nanopores, which can be size adjusted to a target molecule.
蛋白质的氨基酸序列编码了其三维结构和特定功能的信息。从头设计已成为一种操纵蛋白质和肽一级结构的方法,以开发具有所需功能的人工蛋白质和肽。本文描述了一种具有β发夹结构的孔形成肽 SV28 的从头设计,该肽在双层脂质膜中组装形成稳定的纳米孔。这种大型合成纳米孔是一种用于实际应用的完全人工设备。该肽形成多种尺寸的纳米孔结构,直径范围为 1.7 至 6.3nm,并可检测 DNA。为了形成单分散尺寸的纳米孔,我们通过引入甘氨酸弯曲突变对 SV28 进行了重新设计。所得的重新设计的肽形成了一个直径为 1.7nm 的单分散孔,可检测到单个多肽链。这种β发夹肽的从头设计有可能创造人工纳米孔,其大小可以调整到目标分子。