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拉链式 G-四链体/血红素 DNA zyme:用于通用生物分析应用的卓越催化剂。

Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications.

机构信息

The Center for Clinical Molecular Medical detection, The First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, P.R. China.

Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing 400016, P.R. China.

出版信息

Nucleic Acids Res. 2021 Dec 16;49(22):13031-13044. doi: 10.1093/nar/gkab1178.

Abstract

G-quadruplex (G4)/hemin DNAzyme is promising horseradish peroxidase (HRP)-mimic candidate in the biological field. However, its relatively unsatisfactory catalytic capacity limits the potential applications. Inspired by nature protease, we conducted a proximity-enhanced cofactor assembly strategy (PECA) to form an exceptional HRP mimic, namely zippered G4/hemin DNAzyme (Z-G4/H). The hybridization of short oligonucleotides induced proximity assembly of the DNA-grafted hemin (DGH) with the complementary G4 sequences (cG4s), mimicking the tight configuration of protease cofactor and apoenzyme. The detailed investigations of catalytic efficiency and mechanism verified the higher activity, more rapid catalytic rate and high environmental tolerance of the Z-G4/H than the classical G4/hemin DNAzymes (C-G4/H). Furthermore, a proximity recognition transducer has been developed based on the PECA for sensitive detection of gene rearrangement and imaging human epidermal growth factor receptor 2 protein (HER2) dimerization on cell surfaces. Our studies demonstrate the high efficiency of Z-G4/H and its universal application potential in clinical diagnostics and biomolecule interaction research. It also may offer significant opportunities and inspiration for the engineering of the protease-free mimic enzyme.

摘要

G-四链体(G4)/血红素 DNA 酶是生物领域有前途的辣根过氧化物酶(HRP)模拟物候选物。然而,其相对不理想的催化能力限制了其潜在应用。受天然蛋白酶的启发,我们采用近邻增强辅助因子组装策略(PECA)构建了一种卓越的 HRP 模拟物,即拉链 G4/血红素 DNA 酶(Z-G4/H)。短寡核苷酸的杂交诱导 DNA 接枝血红素(DGH)与互补 G4 序列(cG4s)的近邻组装,模拟了蛋白酶辅因子和脱辅基酶的紧密构象。对催化效率和机制的详细研究验证了 Z-G4/H 比经典 G4/血红素 DNA 酶(C-G4/H)具有更高的活性、更快的催化速率和更高的环境耐受性。此外,还基于 PECA 开发了一种近邻识别传感器,用于灵敏检测基因重排和在细胞表面上成像人表皮生长因子受体 2 蛋白(HER2)二聚化。我们的研究表明 Z-G4/H 的高效性及其在临床诊断和生物分子相互作用研究中的广泛应用潜力。它也为无蛋白酶模拟酶的工程设计提供了重要的机会和启示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c98/8682752/c779a415a6a7/gkab1178fig1.jpg

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