Unraveling the Metabolic Requirements of the Gut Commensal .

Bacteroidetes are the most common bacterial phylum in the mammalian intestine and the effects of several spp. on multiple facets of host physiology have been previously described. Of the spp., has recently garnered attention due to its beneficial effects in the context of intestinal inflammation. In this study, we aimed to examine model host intestinal physiological conditions and dietary modifications to characterize their effects on growth. Using Biolog phenotypic microarrays, we evaluated 62 primary carbon sources and determined that ATCC 8384 can use the following carbohydrates as primary carbon sources: 10 disaccharides, 4 trisaccharides, 4 polysaccharides, 4 polymers, 3 L-linked sugars, 6 D-linked sugars, 5 amino-sugars, 6 alcohol sugars, and 15 organic acids. Proteomic profiling of bacteria revealed that a significant portion of the proteome contains proteins important for metabolism. Among the proteins, we found glycosyl hydrolase (GH) familes GH2, GH5, GH20, GH 43, GH88, GH92, and GH95. We also identified multiple proteins with antioxidant properties and reasoned that these proteins may support growth in the GI tract. Upon further testing, we showed that grew robustly in various pH, osmolarity, bile, ethanol, and HO concentrations; indicating that is a well-adapted gut microbe. Taken together, we have demonstrated that key host and diet-derived changes in the intestinal environment influence growth. These data provide the framework for future work toward understanding how diet and lifestyle interventions may promote a beneficial environment for growth.