• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种细胞表面 GH9 内切葡聚糖酶与表面糖结合蛋白协同作用,介导肠道共生菌卵形拟杆菌对木葡聚糖的摄取。

A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.

机构信息

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

Michael Smith Laboratories, University of British Columbia, 2185 East Mall, Vancouver, BC V6T 1Z4, Canada.

出版信息

J Mol Biol. 2019 Mar 1;431(5):981-995. doi: 10.1016/j.jmb.2019.01.008. Epub 2019 Jan 19.

DOI:10.1016/j.jmb.2019.01.008
PMID:30668971
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6478033/
Abstract

Dietary fiber is an important food source for members of the human gut microbiome. Members of the dominant Bacteroidetes phylum capture diverse polysaccharides via the action of multiple cell surface proteins encoded within polysaccharide utilization loci (PUL). The independent activities of PUL-encoded glycoside hydrolases (GHs) and surface glycan-binding proteins (SGBPs) for the harvest of various glycans have been studied in detail, but how these proteins work together to coordinate uptake is poorly understood. Here, we combine genetic and biochemical approaches to discern the interplay between the BoGH9 endoglucanase and the xyloglucan-binding proteins SGBP-A and SGBP-B from the Bacteroides ovatus xyloglucan utilization locus (XyGUL). The expression of BoGH9, a weakly active xyloglucanase in isolation, is required in a strain that expresses a non-binding version of SGBP-A (SGBP-A*). The crystal structure of the BoGH9 enzyme suggests the molecular basis for its robust activity on mixed-linkage β-glucan compared to xyloglucan. However, catalytically inactive site-directed mutants of BoGH9 fail to complement the deletion of the active BoGH9 in a SGBP-A* strain. We also find that SGBP-B is needed in an SGBP-A* background to support growth on xyloglucan, but that the non-binding SGBP-B* protein acts in a dominant negative manner to inhibit growth on xyloglucan. We postulate a model whereby the SGBP-A, SGBP-B, and BoGH9 work together at the cell surface, likely within a discrete complex, and that xyloglucan binding by SGBP-B and BoGH9 may facilitate the orientation of the xyloglucan for transfer across the outer membrane.

摘要

膳食纤维是人类肠道微生物群成员的重要食物来源。厚壁菌门的成员通过多糖利用基因座(PUL)内编码的多种细胞表面蛋白捕获各种多糖。已经详细研究了 PUL 编码糖苷水解酶(GHs)和表面糖结合蛋白(SGBP)对各种糖的独立活性,但是这些蛋白质如何协同作用以协调摄取仍知之甚少。在这里,我们结合遗传和生化方法来辨别卵形拟杆菌木聚糖利用基因座(XyGUL)中的 BoGH9 内切葡聚糖酶与木葡聚糖结合蛋白 SGBP-A 和 SGBP-B 之间的相互作用。BoGH9 的表达是必需的,BoGH9 是一种在分离时活性较弱的木葡聚糖酶,而在表达非结合版本 SGBP-A(SGBP-A*)的菌株中也是必需的。BoGH9 酶的晶体结构表明了其在混合链接β-葡聚糖上与木葡聚糖相比具有强大活性的分子基础。然而,催化失活的 BoGH9 点突变体无法在 SGBP-A菌株中补充活性 BoGH9 的缺失。我们还发现,在 SGBP-A背景下需要 SGBP-B 来支持木葡聚糖的生长,但是非结合的 SGBP-B*蛋白以显性负性方式抑制木葡聚糖的生长。我们推测了一种模型,即 SGBP-A、SGBP-B 和 BoGH9 一起在细胞表面起作用,可能在一个离散的复合物中,并且 SGBP-B 和 BoGH9 对木葡聚糖的结合可能有助于木葡聚糖的取向,以便跨外膜转移。

相似文献

1
A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.一种细胞表面 GH9 内切葡聚糖酶与表面糖结合蛋白协同作用,介导肠道共生菌卵形拟杆菌对木葡聚糖的摄取。
J Mol Biol. 2019 Mar 1;431(5):981-995. doi: 10.1016/j.jmb.2019.01.008. Epub 2019 Jan 19.
2
Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.人类肠道重要共生菌中木葡聚糖识别的分子剖析
mBio. 2016 Apr 26;7(2):e02134-15. doi: 10.1128/mBio.02134-15.
3
Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.表面糖结合蛋白对于人类肠道共生菌卵形拟杆菌利用谷物β-葡聚糖是必不可少的。
Cell Mol Life Sci. 2019 Nov;76(21):4319-4340. doi: 10.1007/s00018-019-03115-3. Epub 2019 May 6.
4
Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human Gut .细胞表面糖苷酶与糖结合蛋白之间的协同作用决定了人类肠道中特定β(1,3)-葡聚糖的利用。
mBio. 2020 Apr 7;11(2):e00095-20. doi: 10.1128/mBio.00095-20.
5
Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.独特的蛋白质结构介导了人类肠道微生物群中特定于物种的β-葡聚糖结合和代谢。
J Biol Chem. 2021 Jan-Jun;296:100415. doi: 10.1016/j.jbc.2021.100415. Epub 2021 Feb 13.
6
Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis.人肠道共生菌均匀拟杆菌对细胞表面木葡聚糖的识别和水解。
Appl Environ Microbiol. 2022 Jan 11;88(1):e0156621. doi: 10.1128/AEM.01566-21. Epub 2021 Nov 3.
7
Mapping Molecular Recognition of β1,3-1,4-Glucans by a Surface Glycan-Binding Protein from the Human Gut Symbiont Bacteroides ovatus.解析β1,3-1,4-葡聚糖的人肠道共生菌卵形拟杆菌表面糖结合蛋白的分子识别。
Microbiol Spectr. 2021 Dec 22;9(3):e0182621. doi: 10.1128/Spectrum.01826-21. Epub 2021 Nov 24.
8
Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.对卵形拟杆菌一个复杂基因位点的结构剖析,该位点赋予人类肠道中木葡聚糖代谢能力。
Open Biol. 2016 Jul;6(7). doi: 10.1098/rsob.160142.
9
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut to Polysaccharide Side Chain Diversity.人肠道共生木葡聚糖利用基因座的适应性进化以适应多糖侧链多样性。
Appl Environ Microbiol. 2019 Oct 1;85(20). doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
10
A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes.一个离散的遗传基因座赋予了特定人类肠道拟杆菌门中木葡聚糖代谢的能力。
Nature. 2014 Feb 27;506(7489):498-502. doi: 10.1038/nature12907. Epub 2014 Jan 19.

引用本文的文献

1
Altered diversity and composition of gut microbiota in Korean children with food allergy.韩国食物过敏儿童肠道微生物群的多样性和组成改变
Clin Transl Allergy. 2025 Mar;15(3):e70036. doi: 10.1002/clt2.70036.
2
Fungal β-glucan-facilitated cross-feeding activities between Bacteroides and Bifidobacterium species.真菌β-葡聚糖促进拟杆菌属和双歧杆菌属之间的交叉喂养活动。
Commun Biol. 2023 May 30;6(1):576. doi: 10.1038/s42003-023-04970-4.
3
An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome.

本文引用的文献

1
SusE facilitates starch uptake independent of starch binding in B. thetaiotaomicron.SusE 促进了淀粉在 B. thetaiotaomicron 中的摄取,而不依赖于淀粉结合。
Mol Microbiol. 2018 Jun;108(5):551-566. doi: 10.1111/mmi.13949. Epub 2018 Apr 14.
2
The Starch Utilization System Assembles around Stationary Starch-Binding Proteins.淀粉利用系统围绕固定化淀粉结合蛋白组装。
Biophys J. 2018 Jul 17;115(2):242-250. doi: 10.1016/j.bpj.2017.12.015. Epub 2018 Jan 12.
3
Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.
评估膳食纤维多糖对人类肠道微生物组和血浆蛋白质组影响的方法。
Proc Natl Acad Sci U S A. 2022 May 17;119(20):e2123411119. doi: 10.1073/pnas.2123411119. Epub 2022 May 9.
4
Unraveling the Metabolic Requirements of the Gut Commensal .解析肠道共生菌的代谢需求
Front Microbiol. 2021 Nov 25;12:745469. doi: 10.3389/fmicb.2021.745469. eCollection 2021.
5
If you eat it, or secrete it, they will grow: the expanding list of nutrients utilized by human gut bacteria.如果你摄入它,或者分泌它,它们就会生长:人类肠道细菌利用的营养物质清单不断扩大。
J Bacteriol. 2020 Nov 9;203(9). doi: 10.1128/JB.00481-20.
6
Linear and branched Glucans degrading enzymes from versatile JCM 13288 and their roles in cooperation with gut bacteria.多功能 JCM 13288 中的线性和支链葡聚糖降解酶及其与肠道细菌协同作用的研究。
Gut Microbes. 2020 Nov 9;12(1):1-18. doi: 10.1080/19490976.2020.1826761.
7
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut to Polysaccharide Side Chain Diversity.人肠道共生木葡聚糖利用基因座的适应性进化以适应多糖侧链多样性。
Appl Environ Microbiol. 2019 Oct 1;85(20). doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
突出的人类肠道拟杆菌利用混合链接β-葡聚糖,主要的促进健康的谷物多糖的分子机制。
Cell Rep. 2017 Oct 10;21(2):417-430. doi: 10.1016/j.celrep.2017.09.049.
4
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans.人体肠道微生物组如何克服糖胺聚糖带来的硫酸化问题。
Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7037-7042. doi: 10.1073/pnas.1704367114. Epub 2017 Jun 19.
5
Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut.工程化调控系统调节肠道中人类共生菌的基因表达。
Cell. 2017 Apr 20;169(3):547-558.e15. doi: 10.1016/j.cell.2017.03.045.
6
A Low-Volume, Parallel Copper-Bicinchoninic Acid (BCA) Assay for Glycoside Hydrolases.一种用于糖苷水解酶的低体积平行铜-二喹啉甲酸(BCA)测定法。
Methods Mol Biol. 2017;1588:3-14. doi: 10.1007/978-1-4939-6899-2_1.
7
Polysaccharide Utilization Loci: Fueling Microbial Communities.多糖利用位点:为微生物群落提供能量
J Bacteriol. 2017 Jul 11;199(15). doi: 10.1128/JB.00860-16. Print 2017 Aug 1.
8
Structural basis for nutrient acquisition by dominant members of the human gut microbiota.人类肠道微生物群主要成员获取营养的结构基础。
Nature. 2017 Jan 19;541(7637):407-411. doi: 10.1038/nature20828. Epub 2017 Jan 11.
9
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
10
Recent structural insights into the enzymology of the ubiquitous plant cell wall glycan xyloglucan.近期对普遍存在于植物细胞壁糖蛋白木葡聚糖的酶学结构的深入了解。
Curr Opin Struct Biol. 2016 Oct;40:43-53. doi: 10.1016/j.sbi.2016.07.005. Epub 2016 Jul 28.